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Main Authors: Wang, Juntang, Wu, Hao, Guo, Runkun, Wang, Yihan, Zou, Dongmian, Xu, Shixin
Format: Preprint
Published: 2025
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Online Access:https://arxiv.org/abs/2510.19248
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author Wang, Juntang
Wu, Hao
Guo, Runkun
Wang, Yihan
Zou, Dongmian
Xu, Shixin
author_facet Wang, Juntang
Wu, Hao
Guo, Runkun
Wang, Yihan
Zou, Dongmian
Xu, Shixin
contents Humans possess an innate ability to group objects by similarity, a cognitive mechanism that clustering algorithms aim to emulate. Recent advances in community detection have enabled the discovery of configurations -- valid hierarchical clusterings across multiple resolution scales -- without requiring labeled data. In this paper, we formally characterize these configurations and identify similar emergent structures in register tokens within Vision Transformers. Unlike register tokens, configurations exhibit lower redundancy and eliminate the need for ad hoc selection. They can be learned through unsupervised or self-supervised methods, yet their selection or composition remains specific to the downstream task and input. Building on these insights, we introduce GraMixC, a plug-and-play module that extracts configurations, aligns them using our Reverse Merge/Split (RMS) technique, and fuses them via attention heads before forwarding them to any downstream predictor. On the DSN1 16S rRNA cultivation-media prediction task, GraMixC improves the R2 score from 0.6 to 0.9 across multiple methods, setting a new state of the art. We further validate GraMixC on standard tabular benchmarks, where it consistently outperforms single-resolution and static-feature baselines.
format Preprint
id arxiv_https___arxiv_org_abs_2510_19248
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Mixing Configurations for Downstream Prediction
Wang, Juntang
Wu, Hao
Guo, Runkun
Wang, Yihan
Zou, Dongmian
Xu, Shixin
Machine Learning
Humans possess an innate ability to group objects by similarity, a cognitive mechanism that clustering algorithms aim to emulate. Recent advances in community detection have enabled the discovery of configurations -- valid hierarchical clusterings across multiple resolution scales -- without requiring labeled data. In this paper, we formally characterize these configurations and identify similar emergent structures in register tokens within Vision Transformers. Unlike register tokens, configurations exhibit lower redundancy and eliminate the need for ad hoc selection. They can be learned through unsupervised or self-supervised methods, yet their selection or composition remains specific to the downstream task and input. Building on these insights, we introduce GraMixC, a plug-and-play module that extracts configurations, aligns them using our Reverse Merge/Split (RMS) technique, and fuses them via attention heads before forwarding them to any downstream predictor. On the DSN1 16S rRNA cultivation-media prediction task, GraMixC improves the R2 score from 0.6 to 0.9 across multiple methods, setting a new state of the art. We further validate GraMixC on standard tabular benchmarks, where it consistently outperforms single-resolution and static-feature baselines.
title Mixing Configurations for Downstream Prediction
topic Machine Learning
url https://arxiv.org/abs/2510.19248