Integrative Analysis of Epigenetic, Transcriptomic, and Metabolomic Responses to Arsenic Exposure Using Coupled Matrix Factorization
Fuente:
arXiv
Saved in:
| Main Authors: | Suthahar, Sujit Silas Armstrong, Allard, Patrick |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Integrating Epigenetic and Phenotypic Features for Biological Age Estimation in Cancer Patients via Multimodal Learning
by: Jiang, Shuyue, et al.
Published: (2025)
by: Jiang, Shuyue, et al.
Published: (2025)
Integrated Transcriptomic Analysis Identifies Immune Remodeling and Prognostic Signatures in Uveal Melanoma
by: Zhongmin Li, et al.
Published: (2026)
by: Zhongmin Li, et al.
Published: (2026)
Epigenetics in B‐CLL
by: Alexandra Chu, et al.
Published: (2026)
by: Alexandra Chu, et al.
Published: (2026)
SemanticST: Spatially Informed Semantic Graph Learning for Clustering, Integration, and Scalable Analysis of Spatial Transcriptomics
by: Zahedi, Roxana, et al.
Published: (2025)
by: Zahedi, Roxana, et al.
Published: (2025)
Integrative Transcriptomic and Single‐Cell Analyses Identify ATP1A1 as a Prognostic and Immune‐Associated Factor in Esophageal Cancer
by: Huishen Yan, et al.
Published: (2026)
by: Huishen Yan, et al.
Published: (2026)
SPP1 + Macrophage‐Associated Prognostic Signature in Hepatocellular Carcinoma via Integrated Single‐Cell and Bulk Transcriptomic Analysis
by: Suyang Yue, et al.
Published: (2025)
by: Suyang Yue, et al.
Published: (2025)
Integrative Single‐Cell Transcriptomics and Network Pharmacology Analysis of Xiao Qing Long Tang in Pediatric Cough‐Variant Asthma
by: Mingming Cui, et al.
Published: (2026)
by: Mingming Cui, et al.
Published: (2026)
Transcriptomic Models for Immunotherapy Response Prediction Show Limited Cross-cohort Generalisability
by: Liang, Yuheng, et al.
Published: (2026)
by: Liang, Yuheng, et al.
Published: (2026)
Transcriptome signature for the identification of bevacizumab responders in ovarian cancer
by: Zolotareva, Olga, et al.
Published: (2025)
by: Zolotareva, Olga, et al.
Published: (2025)
ORBIT: Learning Gene Program Co-Activation Structure for Cell-Type-Stratified Pathway Rewiring Analysis in Single-Cell Transcriptomics
by: Wang, Yuechen, et al.
Published: (2026)
by: Wang, Yuechen, et al.
Published: (2026)
Multiscale Modeling Primer: Focus on Chromatin and Epigenetics
by: Mahajan, Achal, et al.
Published: (2025)
by: Mahajan, Achal, et al.
Published: (2025)
A Systematic Overview of Single-Cell Transcriptomics Databases, their Use cases, and Limitations
by: Gondal, Mahnoor N., et al.
Published: (2024)
by: Gondal, Mahnoor N., et al.
Published: (2024)
GATES: Graph Attention Network with Global Expression Fusion for Deciphering Spatial Transcriptome Architectures
by: Xiao, Xiongtao, et al.
Published: (2024)
by: Xiao, Xiongtao, et al.
Published: (2024)
Discovery of Disease Relationships via Transcriptomic Signature Analysis Powered by Agentic AI
by: Chen, Ke, et al.
Published: (2025)
by: Chen, Ke, et al.
Published: (2025)
TransST: Transfer Learning Embedded Spatial Factor Modeling of Spatial Transcriptomics Data
by: Liu, Shuo Shuo, et al.
Published: (2025)
by: Liu, Shuo Shuo, et al.
Published: (2025)
Transcriptomic and epigenetic responses shed light on soybean resistance to Phytophthora sansomeana
by: Gwonjin Lee, et al.
Published: (2024)
by: Gwonjin Lee, et al.
Published: (2024)
Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
by: Louvel, Guillaume, et al.
Published: (2024)
by: Louvel, Guillaume, et al.
Published: (2024)
Deep Learning-based Feature Discovery for Decoding Phenotypic Plasticity in Pediatric High-Grade Gliomas Single-Cell Transcriptomics
by: Uthamacumaran, Abicumaran
Published: (2025)
by: Uthamacumaran, Abicumaran
Published: (2025)
Physiological Characteristic Changes and Transcriptome Analysis of Maize (Zea mays L.) Roots under Drought Stress
by: Chenglin Zou, et al.
Published: (2024)
by: Chenglin Zou, et al.
Published: (2024)
Integrative Pan-Cancer Analysis of RNMT: a Potential Prognostic and Immunological Biomarker
by: Huang, Shuqiang, et al.
Published: (2022)
by: Huang, Shuqiang, et al.
Published: (2022)
Benchmarking Dimensionality Reduction Techniques for Spatial Transcriptomics
by: Mahmud, Md Ishtyaq, et al.
Published: (2025)
by: Mahmud, Md Ishtyaq, et al.
Published: (2025)
Genome‐Guided and De Novo Transcriptome Analysis of a Newly Isolated Neopyropia yezoensis Strain With Heat Tolerance
by: Jong-il Choi, et al.
Published: (2025)
by: Jong-il Choi, et al.
Published: (2025)
Applications and Challenges of Epigenetic Signature Detection in the Diagnostic Genomics Laboratory–Current and Future Directions
by: Amy Harte
Published: (2026)
by: Amy Harte
Published: (2026)
QuST-LLM: Integrating Large Language Models for Comprehensive Spatial Transcriptomics Analysis
by: Huang, Chao Hui
Published: (2024)
by: Huang, Chao Hui
Published: (2024)
Transcriptome assemblies for two drug‐type cannabis chemotypes by long‐read RNA sequencing
by: Oliver Berkowitz, et al.
Published: (2026)
by: Oliver Berkowitz, et al.
Published: (2026)
Deep Learning in Single-Cell and Spatial Transcriptomics Data Analysis: Advances and Challenges from a Data Science Perspective
by: Ge, Shuang, et al.
Published: (2024)
by: Ge, Shuang, et al.
Published: (2024)
Comparative Analysis of Multi-Omics Integration Using Advanced Graph Neural Networks for Cancer Classification
by: Alharbi, Fadi, et al.
Published: (2024)
by: Alharbi, Fadi, et al.
Published: (2024)
Scaling Laws for Masked-Reconstruction Transformers on Single-Cell Transcriptomics
by: Kendiukhov, Ihor
Published: (2026)
by: Kendiukhov, Ihor
Published: (2026)
Optimizing Sample Size for Supervised Machine Learning with Bulk Transcriptomic Sequencing: A Learning Curve Approach
by: Qi, Yunhui, et al.
Published: (2024)
by: Qi, Yunhui, et al.
Published: (2024)
Artificial Intelligence and Deep Learning Algorithms for Epigenetic Sequence Analysis: A Review for Epigeneticists and AI Experts
by: Tahir, Muhammad, et al.
Published: (2025)
by: Tahir, Muhammad, et al.
Published: (2025)
Towards Unified Molecule-Enhanced Pathology Image Representation Learning via Integrating Spatial Transcriptomics
by: Han, Minghao, et al.
Published: (2024)
by: Han, Minghao, et al.
Published: (2024)
Helix-mRNA: A Hybrid Foundation Model For Full Sequence mRNA Therapeutics
by: Wood, Matthew, et al.
Published: (2025)
by: Wood, Matthew, et al.
Published: (2025)
Graph Neural Networks as a Substitute for Transformers in Single-Cell Transcriptomics
by: Qi, Jiaxin, et al.
Published: (2025)
by: Qi, Jiaxin, et al.
Published: (2025)
DOGMA: Weaving Structural Information into Data-centric Single-cell Transcriptomics Analysis
by: Zhang, Ru, et al.
Published: (2026)
by: Zhang, Ru, et al.
Published: (2026)
CEP-IP: An Explainable Framework for Cell Subpopulation Identification in Single-cell Transcriptomics
by: Wong, Kah Keng
Published: (2025)
by: Wong, Kah Keng
Published: (2025)
Spatial Transcriptomics Iterative Hierarchical Clustering (stIHC): A Novel Method for Identifying Spatial Gene Co-Expression Modules
by: Higgins, Catherine, et al.
Published: (2025)
by: Higgins, Catherine, et al.
Published: (2025)
Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference
by: Fournier, Patrick, et al.
Published: (2025)
by: Fournier, Patrick, et al.
Published: (2025)
SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics
by: Zhu, Qingtian, et al.
Published: (2024)
by: Zhu, Qingtian, et al.
Published: (2024)
A New Framework for Explainable Rare Cell Identification in Single-Cell Transcriptomics Data
by: Su, Di, et al.
Published: (2026)
by: Su, Di, et al.
Published: (2026)
Scalable Amortized GPLVMs for Single Cell Transcriptomics Data
by: Zhao, Sarah, et al.
Published: (2024)
by: Zhao, Sarah, et al.
Published: (2024)
Similar Items
-
Integrating Epigenetic and Phenotypic Features for Biological Age Estimation in Cancer Patients via Multimodal Learning
by: Jiang, Shuyue, et al.
Published: (2025) -
Integrated Transcriptomic Analysis Identifies Immune Remodeling and Prognostic Signatures in Uveal Melanoma
by: Zhongmin Li, et al.
Published: (2026) -
Epigenetics in B‐CLL
by: Alexandra Chu, et al.
Published: (2026) -
SemanticST: Spatially Informed Semantic Graph Learning for Clustering, Integration, and Scalable Analysis of Spatial Transcriptomics
by: Zahedi, Roxana, et al.
Published: (2025) -
Integrative Transcriptomic and Single‐Cell Analyses Identify ATP1A1 as a Prognostic and Immune‐Associated Factor in Esophageal Cancer
by: Huishen Yan, et al.
Published: (2026)