Towards Generalisable Foundation Models for Brain MRI
Fuente:
arXiv
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| Autori principali: | , , |
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| Natura: | Preprint |
| Pubblicazione: |
2025
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| _version_ | 1866909978494763008 |
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| author | Mazher, Moona Parker, Geoff J. M. Alexander, Daniel C. |
| author_facet | Mazher, Moona Parker, Geoff J. M. Alexander, Daniel C. |
| contents | Foundation models in artificial intelligence (AI) are transforming medical imaging by enabling general-purpose feature learning from large-scale, unlabeled datasets. In this work, we introduce BrainFound, a self-supervised foundation model for brain MRI, built by extending DINO-v2, a vision transformer originally designed for 2D natural images. BrainFound adapts DINO-v2 to model full 3D brain anatomy by incorporating volumetric information from sequential MRI slices, moving beyond conventional single-slice paradigms. It supports both single- and multimodal inputs, enabling a broad range of downstream tasks, including disease detection and image segmentation, while generalising across varied imaging protocols and clinical scenarios. We show that BrainFound consistently outperforms existing self-supervised pretraining strategies and supervised baselines, particularly in label-scarce and multi-contrast settings. By integrating information from diverse 3D MRI modalities (e.g., T1, T2, FLAIR), it enhances diagnostic accuracy and reduces dependency on extensive expert annotations. This flexibility makes BrainFound a scalable and practical solution for 3D neuroimaging pipelines, with significant potential for clinical deployment and research innovation. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2510_23415 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Towards Generalisable Foundation Models for Brain MRI Mazher, Moona Parker, Geoff J. M. Alexander, Daniel C. Computer Vision and Pattern Recognition Foundation models in artificial intelligence (AI) are transforming medical imaging by enabling general-purpose feature learning from large-scale, unlabeled datasets. In this work, we introduce BrainFound, a self-supervised foundation model for brain MRI, built by extending DINO-v2, a vision transformer originally designed for 2D natural images. BrainFound adapts DINO-v2 to model full 3D brain anatomy by incorporating volumetric information from sequential MRI slices, moving beyond conventional single-slice paradigms. It supports both single- and multimodal inputs, enabling a broad range of downstream tasks, including disease detection and image segmentation, while generalising across varied imaging protocols and clinical scenarios. We show that BrainFound consistently outperforms existing self-supervised pretraining strategies and supervised baselines, particularly in label-scarce and multi-contrast settings. By integrating information from diverse 3D MRI modalities (e.g., T1, T2, FLAIR), it enhances diagnostic accuracy and reduces dependency on extensive expert annotations. This flexibility makes BrainFound a scalable and practical solution for 3D neuroimaging pipelines, with significant potential for clinical deployment and research innovation. |
| title | Towards Generalisable Foundation Models for Brain MRI |
| topic | Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2510.23415 |