PanDelos-plus: A parallel algorithm for computing sequence homology in pangenomic analysis
Fuente:
arXiv
Saved in:
| Main Authors: | Colli, Simone, Maresi, Emiliano, Bonnici, Vincenzo |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
An Asynchronous Distributed-Memory Parallel Algorithm for k-mer Counting
by: Hati, Souvadra, et al.
Published: (2025)
by: Hati, Souvadra, et al.
Published: (2025)
gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs
by: Schmidt, Bertil, et al.
Published: (2024)
by: Schmidt, Bertil, et al.
Published: (2024)
High-Performance Sorting-Based k-mer Counting in Distributed Memory with Flexible Hybrid Parallelism
by: Li, Yifan, et al.
Published: (2024)
by: Li, Yifan, et al.
Published: (2024)
RUBICON: A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers
by: Singh, Gagandeep, et al.
Published: (2022)
by: Singh, Gagandeep, et al.
Published: (2022)
SAGe: A Lightweight Algorithm-Architecture Co-Design for Mitigating the Data Preparation Bottleneck in Large-Scale Genome Sequence Analysis
by: Ghiasi, Nika Mansouri, et al.
Published: (2025)
by: Ghiasi, Nika Mansouri, et al.
Published: (2025)
NMP-PaK: Near-Memory Processing Acceleration of Scalable De Novo Genome Assembly
by: Kim, Heewoo, et al.
Published: (2025)
by: Kim, Heewoo, et al.
Published: (2025)
MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing
by: Ghiasi, Nika Mansouri, et al.
Published: (2024)
by: Ghiasi, Nika Mansouri, et al.
Published: (2024)
TorchGWAS : GPU-accelerated GWAS for thousands of quantitative phenotypes
by: Zhao, Xingzhong, et al.
Published: (2026)
by: Zhao, Xingzhong, et al.
Published: (2026)
Lock-free de Bruijn graph
by: Górniak, Daniel, et al.
Published: (2024)
by: Górniak, Daniel, et al.
Published: (2024)
Efficient Chromosome Parallelization for Precision Medicine Genomic Workflows
by: Montserrat, Daniel Mas, et al.
Published: (2025)
by: Montserrat, Daniel Mas, et al.
Published: (2025)
Matrix representation and GPU-optimized parallel B-spline computing
by: Wu, Jiayu, et al.
Published: (2025)
by: Wu, Jiayu, et al.
Published: (2025)
A parallel parser for regular expressions
by: Borsotti, Angelo, et al.
Published: (2025)
by: Borsotti, Angelo, et al.
Published: (2025)
Is a LOCAL algorithm computable?
by: Cruciani, Antonio, et al.
Published: (2026)
by: Cruciani, Antonio, et al.
Published: (2026)
Pipit: Scripting the analysis of parallel execution traces
by: Bhatele, Abhinav, et al.
Published: (2023)
by: Bhatele, Abhinav, et al.
Published: (2023)
An efficient implementation of parallel simulated annealing algorithm in GPUs
by: Ferreiro, A. M., et al.
Published: (2024)
by: Ferreiro, A. M., et al.
Published: (2024)
A common parallel framework for LLP combinatorial problems
by: Alves, David Ribeiro, et al.
Published: (2026)
by: Alves, David Ribeiro, et al.
Published: (2026)
Massively parallel CMA-ES with increasing population
by: Redon, David, et al.
Published: (2024)
by: Redon, David, et al.
Published: (2024)
Toward parallel intelligence: an interdisciplinary solution for complex systems
by: Zhao, Yong, et al.
Published: (2023)
by: Zhao, Yong, et al.
Published: (2023)
Minimizing speculation overhead in a parallel recognizer for regular texts
by: Borsotti, Angelo, et al.
Published: (2024)
by: Borsotti, Angelo, et al.
Published: (2024)
Energy efficiency optimization of task-parallel codes on asymmetric architectures
by: Costero, Luis, et al.
Published: (2024)
by: Costero, Luis, et al.
Published: (2024)
MirLibSpark: A Scalable NGS Plant MicroRNA Prediction Pipeline for Multi-Library Functional Annotation
by: Wu, Chao-Jung, et al.
Published: (2025)
by: Wu, Chao-Jung, et al.
Published: (2025)
Static task mapping for heterogeneous systems based on series-parallel decompositions
by: Wilhelm, Martin, et al.
Published: (2025)
by: Wilhelm, Martin, et al.
Published: (2025)
Regent based parallel meshfree LSKUM solver for heterogenous HPC platforms
by: Salil, Sanath, et al.
Published: (2024)
by: Salil, Sanath, et al.
Published: (2024)
Randomized algorithms for distributed computation of principal component analysis and singular value decomposition
by: Li, Huamin, et al.
Published: (2016)
by: Li, Huamin, et al.
Published: (2016)
An inherently parallel H2-ULV factorization for solving dense linear systems on GPUs
by: Ma, Qianxiang, et al.
Published: (2025)
by: Ma, Qianxiang, et al.
Published: (2025)
A large-scale distributed parallel discrete event simulation engines based on Warped2 for Wargaming simulation
by: Jia, Xiaoning, et al.
Published: (2025)
by: Jia, Xiaoning, et al.
Published: (2025)
cuVegas: Accelerate Multidimensional Monte Carlo Integration through a Parallelized CUDA-based Implementation of the VEGAS Enhanced Algorithm
by: Tolotti, Emiliano, et al.
Published: (2024)
by: Tolotti, Emiliano, et al.
Published: (2024)
A dynamic parallel method for performance optimization on hybrid CPUs
by: Yu, Luo, et al.
Published: (2024)
by: Yu, Luo, et al.
Published: (2024)
Stably computable relations and predicates
by: Aspnes, James
Published: (2024)
by: Aspnes, James
Published: (2024)
A parallel algorithm for the odd two-face shortest k-disjoint path problem
by: Chakraborty, Srijan, et al.
Published: (2025)
by: Chakraborty, Srijan, et al.
Published: (2025)
What can be computed in average anonymous networks?
by: Rybicki, Joel, et al.
Published: (2026)
by: Rybicki, Joel, et al.
Published: (2026)
Task queue implementation for edge computing platform
by: Maksimovic, Veljko, et al.
Published: (2024)
by: Maksimovic, Veljko, et al.
Published: (2024)
A sparsity-aware distributed-memory algorithm for sparse-sparse matrix multiplication
by: Hong, Yuxi, et al.
Published: (2024)
by: Hong, Yuxi, et al.
Published: (2024)
A Kubernetes custom scheduler based on reinforcement learning for compute-intensive pods
by: Zhou, Hanlin, et al.
Published: (2026)
by: Zhou, Hanlin, et al.
Published: (2026)
Combining GPU and CPU for accelerating evolutionary computing workloads
by: Eynaliyev, Rustam, et al.
Published: (2025)
by: Eynaliyev, Rustam, et al.
Published: (2025)
FRESCO: Fast and Reliable Edge Offloading with Reputation-based Hybrid Smart Contracts
by: Zilic, Josip, et al.
Published: (2024)
by: Zilic, Josip, et al.
Published: (2024)
Simulating LLM training workloads for heterogeneous compute and network infrastructure
by: Kumar, Sumit, et al.
Published: (2025)
by: Kumar, Sumit, et al.
Published: (2025)
CRIU -- Checkpoint Restore in Userspace for computational simulations and scientific applications
by: Andrijauskas, Fabio, et al.
Published: (2024)
by: Andrijauskas, Fabio, et al.
Published: (2024)
Workflow decomposition algorithm for scheduling with quantum annealer-based hybrid solver
by: Kroczek, Marcin, et al.
Published: (2025)
by: Kroczek, Marcin, et al.
Published: (2025)
On the impact of unlimited computational power in OBLOT: consequences for synchronous robots on graphs
by: Cicerone, Serafino, et al.
Published: (2025)
by: Cicerone, Serafino, et al.
Published: (2025)
Similar Items
-
An Asynchronous Distributed-Memory Parallel Algorithm for k-mer Counting
by: Hati, Souvadra, et al.
Published: (2025) -
gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs
by: Schmidt, Bertil, et al.
Published: (2024) -
High-Performance Sorting-Based k-mer Counting in Distributed Memory with Flexible Hybrid Parallelism
by: Li, Yifan, et al.
Published: (2024) -
RUBICON: A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers
by: Singh, Gagandeep, et al.
Published: (2022) -
SAGe: A Lightweight Algorithm-Architecture Co-Design for Mitigating the Data Preparation Bottleneck in Large-Scale Genome Sequence Analysis
by: Ghiasi, Nika Mansouri, et al.
Published: (2025)