HMM for short independent sequences: Multiple sequence Baum-Welch application

Fuente: arXiv
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Main Authors: Cabrera-Bean, Margarita, Vidal, Josep, Fernandez-Bertolin, Sergio, Roso-Llorach, Albert, Violan, Concepcion
Format: Preprint
Published: 2025
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author Cabrera-Bean, Margarita
Vidal, Josep
Fernandez-Bertolin, Sergio
Roso-Llorach, Albert
Violan, Concepcion
author_facet Cabrera-Bean, Margarita
Vidal, Josep
Fernandez-Bertolin, Sergio
Roso-Llorach, Albert
Violan, Concepcion
contents In the classical setting, the training of a Hidden Markov Model (HMM) typically relies on a single, sufficiently long observation sequence that can be regarded as representative of the underlying stochastic process. In this context, the Expectation Maximization (EM) algorithm is applied in its specialized form for HMMs, namely the Baum Welch algorithm, which has been extensively employed in applications such as speech recognition. The objective of this work is to present pseudocode formulations for both the training and decoding procedures of HMMs in a different scenario, where the available data consist of multiple independent temporal sequences generated by the same model, each of relatively short duration, i.e., containing only a limited number of samples. Special emphasis is placed on the relevance of this formulation to longitudinal studies in population health, where datasets are naturally structured as collections of short trajectories across individuals with point data at follow up.
format Preprint
id arxiv_https___arxiv_org_abs_2510_26532
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle HMM for short independent sequences: Multiple sequence Baum-Welch application
Cabrera-Bean, Margarita
Vidal, Josep
Fernandez-Bertolin, Sergio
Roso-Llorach, Albert
Violan, Concepcion
Signal Processing
In the classical setting, the training of a Hidden Markov Model (HMM) typically relies on a single, sufficiently long observation sequence that can be regarded as representative of the underlying stochastic process. In this context, the Expectation Maximization (EM) algorithm is applied in its specialized form for HMMs, namely the Baum Welch algorithm, which has been extensively employed in applications such as speech recognition. The objective of this work is to present pseudocode formulations for both the training and decoding procedures of HMMs in a different scenario, where the available data consist of multiple independent temporal sequences generated by the same model, each of relatively short duration, i.e., containing only a limited number of samples. Special emphasis is placed on the relevance of this formulation to longitudinal studies in population health, where datasets are naturally structured as collections of short trajectories across individuals with point data at follow up.
title HMM for short independent sequences: Multiple sequence Baum-Welch application
topic Signal Processing
url https://arxiv.org/abs/2510.26532