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Main Authors: Petrović, Katarina, Atanackovic, Lazar, Moro, Viggo, Kapuśniak, Kacper, Ceylan, İsmail İlkan, Bronstein, Michael, Bose, Avishek Joey, Tong, Alexander
Format: Preprint
Published: 2025
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Online Access:https://arxiv.org/abs/2510.26645
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author Petrović, Katarina
Atanackovic, Lazar
Moro, Viggo
Kapuśniak, Kacper
Ceylan, İsmail İlkan
Bronstein, Michael
Bose, Avishek Joey
Tong, Alexander
author_facet Petrović, Katarina
Atanackovic, Lazar
Moro, Viggo
Kapuśniak, Kacper
Ceylan, İsmail İlkan
Bronstein, Michael
Bose, Avishek Joey
Tong, Alexander
contents Modeling the transport dynamics of natural processes from population-level observations is a ubiquitous problem in the natural sciences. Such models rely on key assumptions about the underlying process in order to enable faithful learning of governing dynamics that mimic the actual system behavior. The de facto assumption in current approaches relies on the principle of least action that results in gradient field dynamics and leads to trajectories minimizing an energy functional between two probability measures. However, many real-world systems, such as cell cycles in single-cell RNA, are known to exhibit non-gradient, periodic behavior, which fundamentally cannot be captured by current state-of-the-art methods such as flow and bridge matching. In this paper, we introduce Curly Flow Matching (Curly-FM), a novel approach that is capable of learning non-gradient field dynamics by designing and solving a Schrödinger bridge problem with a non-zero drift reference process -- in stark contrast to typical zero-drift reference processes -- which is constructed using inferred velocities in addition to population snapshot data. We showcase Curly-FM by solving the trajectory inference problems for single cells, computational fluid dynamics, and ocean currents with approximate velocities. We demonstrate that Curly-FM can learn trajectories that better match both the reference process and population marginals. Curly-FM expands flow matching models beyond the modeling of populations and towards the modeling of known periodic behavior in physical systems. Our code repository is accessible at: https://github.com/kpetrovicc/curly-flow-matching.git
format Preprint
id arxiv_https___arxiv_org_abs_2510_26645
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Curly Flow Matching for Learning Non-gradient Field Dynamics
Petrović, Katarina
Atanackovic, Lazar
Moro, Viggo
Kapuśniak, Kacper
Ceylan, İsmail İlkan
Bronstein, Michael
Bose, Avishek Joey
Tong, Alexander
Machine Learning
Modeling the transport dynamics of natural processes from population-level observations is a ubiquitous problem in the natural sciences. Such models rely on key assumptions about the underlying process in order to enable faithful learning of governing dynamics that mimic the actual system behavior. The de facto assumption in current approaches relies on the principle of least action that results in gradient field dynamics and leads to trajectories minimizing an energy functional between two probability measures. However, many real-world systems, such as cell cycles in single-cell RNA, are known to exhibit non-gradient, periodic behavior, which fundamentally cannot be captured by current state-of-the-art methods such as flow and bridge matching. In this paper, we introduce Curly Flow Matching (Curly-FM), a novel approach that is capable of learning non-gradient field dynamics by designing and solving a Schrödinger bridge problem with a non-zero drift reference process -- in stark contrast to typical zero-drift reference processes -- which is constructed using inferred velocities in addition to population snapshot data. We showcase Curly-FM by solving the trajectory inference problems for single cells, computational fluid dynamics, and ocean currents with approximate velocities. We demonstrate that Curly-FM can learn trajectories that better match both the reference process and population marginals. Curly-FM expands flow matching models beyond the modeling of populations and towards the modeling of known periodic behavior in physical systems. Our code repository is accessible at: https://github.com/kpetrovicc/curly-flow-matching.git
title Curly Flow Matching for Learning Non-gradient Field Dynamics
topic Machine Learning
url https://arxiv.org/abs/2510.26645