_version_ 1866917051146174464
author Villaescusa-Navarro, Francisco
Bolliet, Boris
Villanueva-Domingo, Pablo
Bayer, Adrian E.
Acquah, Aidan
Amancharla, Chetana
Barzilay-Siegal, Almog
Bermejo, Pablo
Bilodeau, Camille
Ramírez, Pablo Cárdenas
Cranmer, Miles
França, Urbano L.
Hahn, ChangHoon
Jiang, Yan-Fei
Jimenez, Raul
Lee, Jun-Young
Lerario, Antonio
Mamun, Osman
Meier, Thomas
Ojha, Anupam A.
Protopapas, Pavlos
Roy, Shimanto
Spergel, David N.
Tarancón-Álvarez, Pedro
Tiwari, Ujjwal
Viel, Matteo
Wadekar, Digvijay
Wang, Chi
Wang, Bonny Y.
Xu, Licong
Yovel, Yossi
Yue, Shuwen
Zhou, Wen-Han
Zhu, Qiyao
Zou, Jiajun
Zubeldia, Íñigo
author_facet Villaescusa-Navarro, Francisco
Bolliet, Boris
Villanueva-Domingo, Pablo
Bayer, Adrian E.
Acquah, Aidan
Amancharla, Chetana
Barzilay-Siegal, Almog
Bermejo, Pablo
Bilodeau, Camille
Ramírez, Pablo Cárdenas
Cranmer, Miles
França, Urbano L.
Hahn, ChangHoon
Jiang, Yan-Fei
Jimenez, Raul
Lee, Jun-Young
Lerario, Antonio
Mamun, Osman
Meier, Thomas
Ojha, Anupam A.
Protopapas, Pavlos
Roy, Shimanto
Spergel, David N.
Tarancón-Álvarez, Pedro
Tiwari, Ujjwal
Viel, Matteo
Wadekar, Digvijay
Wang, Chi
Wang, Bonny Y.
Xu, Licong
Yovel, Yossi
Yue, Shuwen
Zhou, Wen-Han
Zhu, Qiyao
Zou, Jiajun
Zubeldia, Íñigo
contents We present Denario, an AI multi-agent system designed to serve as a scientific research assistant. Denario can perform many different tasks, such as generating ideas, checking the literature, developing research plans, writing and executing code, making plots, and drafting and reviewing a scientific paper. The system has a modular architecture, allowing it to handle specific tasks, such as generating an idea, or carrying out end-to-end scientific analysis using Cmbagent as a deep-research backend. In this work, we describe in detail Denario and its modules, and illustrate its capabilities by presenting multiple AI-generated papers generated by it in many different scientific disciplines such as astrophysics, biology, biophysics, biomedical informatics, chemistry, material science, mathematical physics, medicine, neuroscience and planetary science. Denario also excels at combining ideas from different disciplines, and we illustrate this by showing a paper that applies methods from quantum physics and machine learning to astrophysical data. We report the evaluations performed on these papers by domain experts, who provided both numerical scores and review-like feedback. We then highlight the strengths, weaknesses, and limitations of the current system. Finally, we discuss the ethical implications of AI-driven research and reflect on how such technology relates to the philosophy of science. We publicly release the code at https://github.com/AstroPilot-AI/Denario. A Denario demo can also be run directly on the web at https://huggingface.co/spaces/astropilot-ai/Denario, and the full app will be deployed on the cloud.
format Preprint
id arxiv_https___arxiv_org_abs_2510_26887
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle The Denario project: Deep knowledge AI agents for scientific discovery
Villaescusa-Navarro, Francisco
Bolliet, Boris
Villanueva-Domingo, Pablo
Bayer, Adrian E.
Acquah, Aidan
Amancharla, Chetana
Barzilay-Siegal, Almog
Bermejo, Pablo
Bilodeau, Camille
Ramírez, Pablo Cárdenas
Cranmer, Miles
França, Urbano L.
Hahn, ChangHoon
Jiang, Yan-Fei
Jimenez, Raul
Lee, Jun-Young
Lerario, Antonio
Mamun, Osman
Meier, Thomas
Ojha, Anupam A.
Protopapas, Pavlos
Roy, Shimanto
Spergel, David N.
Tarancón-Álvarez, Pedro
Tiwari, Ujjwal
Viel, Matteo
Wadekar, Digvijay
Wang, Chi
Wang, Bonny Y.
Xu, Licong
Yovel, Yossi
Yue, Shuwen
Zhou, Wen-Han
Zhu, Qiyao
Zou, Jiajun
Zubeldia, Íñigo
Artificial Intelligence
Computation and Language
Machine Learning
Multiagent Systems
We present Denario, an AI multi-agent system designed to serve as a scientific research assistant. Denario can perform many different tasks, such as generating ideas, checking the literature, developing research plans, writing and executing code, making plots, and drafting and reviewing a scientific paper. The system has a modular architecture, allowing it to handle specific tasks, such as generating an idea, or carrying out end-to-end scientific analysis using Cmbagent as a deep-research backend. In this work, we describe in detail Denario and its modules, and illustrate its capabilities by presenting multiple AI-generated papers generated by it in many different scientific disciplines such as astrophysics, biology, biophysics, biomedical informatics, chemistry, material science, mathematical physics, medicine, neuroscience and planetary science. Denario also excels at combining ideas from different disciplines, and we illustrate this by showing a paper that applies methods from quantum physics and machine learning to astrophysical data. We report the evaluations performed on these papers by domain experts, who provided both numerical scores and review-like feedback. We then highlight the strengths, weaknesses, and limitations of the current system. Finally, we discuss the ethical implications of AI-driven research and reflect on how such technology relates to the philosophy of science. We publicly release the code at https://github.com/AstroPilot-AI/Denario. A Denario demo can also be run directly on the web at https://huggingface.co/spaces/astropilot-ai/Denario, and the full app will be deployed on the cloud.
title The Denario project: Deep knowledge AI agents for scientific discovery
topic Artificial Intelligence
Computation and Language
Machine Learning
Multiagent Systems
url https://arxiv.org/abs/2510.26887