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Main Authors: Dubey, ShivKishan, Sharma, Rohit
Format: Preprint
Published: 2025
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Online Access:https://arxiv.org/abs/2511.01216
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author Dubey, ShivKishan
Sharma, Rohit
author_facet Dubey, ShivKishan
Sharma, Rohit
contents As temperature drops, molecular systems may undergo spontaneous ordering, moving from random behavior to orderly structure. This research demonstrates a direct analogy between this type of thermodynamic ordering in molecular systems and the development of coherent logic in computationally complex problem sets. We have proposed a mapping of Boolean SAT problem instances to pairwise Ising Hamiltonian models. Using simulated annealing, we then applied phenomenal cooling to the system through thermal evolution from high entropy random assignment to lower entropy, ordered assignments (the energy minima) using molecular cooling analogs. This indicated that there was a rapid "first-order" or "logical crystallization" of satisfiable logical configurations. The degree of backbone rigidity did not strongly correlate with the level of physical ordering observed in the system; thus, it appears that there is primarily a local alignment of constraint satisfaction occurring in the system. Thus, we have provided empirical evidence that satisfiable logical configurations are analogous to the low energy crystalline states observed in molecular systems and provide evidence for a unified thermodynamic view of computational coherence and complexity.
format Preprint
id arxiv_https___arxiv_org_abs_2511_01216
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle A Physical Analogy between Molecular Ordering and SAT-to-Ising Annealing
Dubey, ShivKishan
Sharma, Rohit
Logic in Computer Science
68Q17
As temperature drops, molecular systems may undergo spontaneous ordering, moving from random behavior to orderly structure. This research demonstrates a direct analogy between this type of thermodynamic ordering in molecular systems and the development of coherent logic in computationally complex problem sets. We have proposed a mapping of Boolean SAT problem instances to pairwise Ising Hamiltonian models. Using simulated annealing, we then applied phenomenal cooling to the system through thermal evolution from high entropy random assignment to lower entropy, ordered assignments (the energy minima) using molecular cooling analogs. This indicated that there was a rapid "first-order" or "logical crystallization" of satisfiable logical configurations. The degree of backbone rigidity did not strongly correlate with the level of physical ordering observed in the system; thus, it appears that there is primarily a local alignment of constraint satisfaction occurring in the system. Thus, we have provided empirical evidence that satisfiable logical configurations are analogous to the low energy crystalline states observed in molecular systems and provide evidence for a unified thermodynamic view of computational coherence and complexity.
title A Physical Analogy between Molecular Ordering and SAT-to-Ising Annealing
topic Logic in Computer Science
68Q17
url https://arxiv.org/abs/2511.01216