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Main Authors: Wang, Xiaoda, Zhao, Yuji, Han, Kaiqiao, Luo, Xiao, van Rooij, Sanne, Stevens, Jennifer, He, Lifang, Zhan, Liang, Sun, Yizhou, Wang, Wei, Yang, Carl
Format: Preprint
Published: 2025
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Online Access:https://arxiv.org/abs/2511.04789
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author Wang, Xiaoda
Zhao, Yuji
Han, Kaiqiao
Luo, Xiao
van Rooij, Sanne
Stevens, Jennifer
He, Lifang
Zhan, Liang
Sun, Yizhou
Wang, Wei
Yang, Carl
author_facet Wang, Xiaoda
Zhao, Yuji
Han, Kaiqiao
Luo, Xiao
van Rooij, Sanne
Stevens, Jennifer
He, Lifang
Zhan, Liang
Sun, Yizhou
Wang, Wei
Yang, Carl
contents Parkinson's disease (PD) shows heterogeneous, evolving brain-morphometry patterns. Modeling these longitudinal trajectories enables mechanistic insight, treatment development, and individualized 'digital-twin' forecasting. However, existing methods usually adopt recurrent neural networks and transformer architectures, which rely on discrete, regularly sampled data while struggling to handle irregular and sparse magnetic resonance imaging (MRI) in PD cohorts. Moreover, these methods have difficulty capturing individual heterogeneity including variations in disease onset, progression rate, and symptom severity, which is a hallmark of PD. To address these challenges, we propose CNODE (Conditional Neural ODE), a novel framework for continuous, individualized PD progression forecasting. The core of CNODE is to model morphological brain changes as continuous temporal processes using a neural ODE model. In addition, we jointly learn patient-specific initial time and progress speed to align individual trajectories into a shared progression trajectory. We validate CNODE on the Parkinson's Progression Markers Initiative (PPMI) dataset. Experimental results show that our method outperforms state-of-the-art baselines in forecasting longitudinal PD progression.
format Preprint
id arxiv_https___arxiv_org_abs_2511_04789
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Conditional Neural ODE for Longitudinal Parkinson's Disease Progression Forecasting
Wang, Xiaoda
Zhao, Yuji
Han, Kaiqiao
Luo, Xiao
van Rooij, Sanne
Stevens, Jennifer
He, Lifang
Zhan, Liang
Sun, Yizhou
Wang, Wei
Yang, Carl
Machine Learning
Parkinson's disease (PD) shows heterogeneous, evolving brain-morphometry patterns. Modeling these longitudinal trajectories enables mechanistic insight, treatment development, and individualized 'digital-twin' forecasting. However, existing methods usually adopt recurrent neural networks and transformer architectures, which rely on discrete, regularly sampled data while struggling to handle irregular and sparse magnetic resonance imaging (MRI) in PD cohorts. Moreover, these methods have difficulty capturing individual heterogeneity including variations in disease onset, progression rate, and symptom severity, which is a hallmark of PD. To address these challenges, we propose CNODE (Conditional Neural ODE), a novel framework for continuous, individualized PD progression forecasting. The core of CNODE is to model morphological brain changes as continuous temporal processes using a neural ODE model. In addition, we jointly learn patient-specific initial time and progress speed to align individual trajectories into a shared progression trajectory. We validate CNODE on the Parkinson's Progression Markers Initiative (PPMI) dataset. Experimental results show that our method outperforms state-of-the-art baselines in forecasting longitudinal PD progression.
title Conditional Neural ODE for Longitudinal Parkinson's Disease Progression Forecasting
topic Machine Learning
url https://arxiv.org/abs/2511.04789