Entangled Schrödinger Bridge Matching
Fuente:
arXiv
Saved in:
| Main Authors: | Tang, Sophia, Zhang, Yinuo, Chatterjee, Pranam |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design
by: Chen, Tong, et al.
Published: (2025)
by: Chen, Tong, et al.
Published: (2025)
Gumbel-Softmax Flow Matching with Straight-Through Guidance for Controllable Biological Sequence Generation
by: Tang, Sophia, et al.
Published: (2025)
by: Tang, Sophia, et al.
Published: (2025)
Minimal-Action Discrete Schrödinger Bridge Matching for Peptide Sequence Design
by: Goel, Shrey, et al.
Published: (2026)
by: Goel, Shrey, et al.
Published: (2026)
AReUReDi: Annealed Rectified Updates for Refining Discrete Flows with Multi-Objective Guidance
by: Chen, Tong, et al.
Published: (2025)
by: Chen, Tong, et al.
Published: (2025)
TR2-D2: Tree Search Guided Trajectory-Aware Fine-Tuning for Discrete Diffusion
by: Tang, Sophia, et al.
Published: (2025)
by: Tang, Sophia, et al.
Published: (2025)
TD3B: Transition-Directed Discrete Diffusion for Allosteric Binder Generation
by: Cao, Hanqun, et al.
Published: (2026)
by: Cao, Hanqun, et al.
Published: (2026)
PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion
by: Tang, Sophia, et al.
Published: (2024)
by: Tang, Sophia, et al.
Published: (2024)
Branched Schrödinger Bridge Matching
by: Tang, Sophia, et al.
Published: (2025)
by: Tang, Sophia, et al.
Published: (2025)
mRNAutilus: Multi-Objective-Guided Discrete Generation of mRNA with Optimized Therapeutic Properties
by: Patel, Sawan, et al.
Published: (2026)
by: Patel, Sawan, et al.
Published: (2026)
Token-Level Guided Discrete Diffusion for Membrane Protein Design
by: Goel, Shrey, et al.
Published: (2024)
by: Goel, Shrey, et al.
Published: (2024)
PepDoRA: A Unified Peptide Language Model via Weight-Decomposed Low-Rank Adaptation
by: Wang, Leyao, et al.
Published: (2024)
by: Wang, Leyao, et al.
Published: (2024)
Flexible MOF Generation with Torsion-Aware Flow Matching
by: Kim, Nayoung, et al.
Published: (2025)
by: Kim, Nayoung, et al.
Published: (2025)
Dirichlet Flow Matching with Applications to DNA Sequence Design
by: Stark, Hannes, et al.
Published: (2024)
by: Stark, Hannes, et al.
Published: (2024)
AlphaFold Meets Flow Matching for Generating Protein Ensembles
by: Jing, Bowen, et al.
Published: (2024)
by: Jing, Bowen, et al.
Published: (2024)
Bridging the Gap between Chemical Reaction Pretraining and Conditional Molecule Generation with a Unified Model
by: Qiang, Bo, et al.
Published: (2023)
by: Qiang, Bo, et al.
Published: (2023)
Exploring Discrete Flow Matching for 3D De Novo Molecule Generation
by: Dunn, Ian, et al.
Published: (2024)
by: Dunn, Ian, et al.
Published: (2024)
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone Generation
by: Huguet, Guillaume, et al.
Published: (2024)
by: Huguet, Guillaume, et al.
Published: (2024)
RNACG: A Universal RNA Sequence Conditional Generation model based on Flow-Matching
by: Gao, Letian, et al.
Published: (2024)
by: Gao, Letian, et al.
Published: (2024)
Mixed Continuous and Categorical Flow Matching for 3D De Novo Molecule Generation
by: Dunn, Ian, et al.
Published: (2024)
by: Dunn, Ian, et al.
Published: (2024)
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
by: Nori, Divya, et al.
Published: (2024)
by: Nori, Divya, et al.
Published: (2024)
FlowMol3: Flow Matching for 3D De Novo Small-Molecule Generation
by: Dunn, Ian, et al.
Published: (2025)
by: Dunn, Ian, et al.
Published: (2025)
Template-Guided 3D Molecular Pose Generation via Flow Matching and Differentiable Optimization
by: Bergues, Noémie, et al.
Published: (2025)
by: Bergues, Noémie, et al.
Published: (2025)
Thin Bridges for Drug Text Alignment: Lightweight Contrastive Learning for Target Specific Drug Retrieval
by: Tupakula, Mallikarjuna
Published: (2025)
by: Tupakula, Mallikarjuna
Published: (2025)
Learning Structure, Energy, and Dynamics: A Survey of Artificial Intelligence for Protein Dynamics
by: Tang, Haocheng, et al.
Published: (2026)
by: Tang, Haocheng, et al.
Published: (2026)
CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction
by: Han, Rong, et al.
Published: (2024)
by: Han, Rong, et al.
Published: (2024)
RetroBridge: Modeling Retrosynthesis with Markov Bridges
by: Igashov, Ilia, et al.
Published: (2023)
by: Igashov, Ilia, et al.
Published: (2023)
Bridge-IF: Learning Inverse Protein Folding with Markov Bridges
by: Zhu, Yiheng, et al.
Published: (2024)
by: Zhu, Yiheng, et al.
Published: (2024)
Structure-Informed Protein Language Model
by: Zhang, Zuobai, et al.
Published: (2024)
by: Zhang, Zuobai, et al.
Published: (2024)
ProtIR: Iterative Refinement between Retrievers and Predictors for Protein Function Annotation
by: Zhang, Zuobai, et al.
Published: (2024)
by: Zhang, Zuobai, et al.
Published: (2024)
Decomposing the Generalization Gap in PROTAC Activity Prediction: Variance Attribution and the Inter-Laboratory Ceiling
by: Klamt, Thor, et al.
Published: (2026)
by: Klamt, Thor, et al.
Published: (2026)
Force-Guided Bridge Matching for Full-Atom Time-Coarsened Dynamics of Peptides
by: Yu, Ziyang, et al.
Published: (2024)
by: Yu, Ziyang, et al.
Published: (2024)
Multi-Scale Representation Learning for Protein Fitness Prediction
by: Zhang, Zuobai, et al.
Published: (2024)
by: Zhang, Zuobai, et al.
Published: (2024)
RNA-FrameFlow: Flow Matching for de novo 3D RNA Backbone Design
by: Anand, Rishabh, et al.
Published: (2024)
by: Anand, Rishabh, et al.
Published: (2024)
PPFlow: Target-aware Peptide Design with Torsional Flow Matching
by: Lin, Haitao, et al.
Published: (2024)
by: Lin, Haitao, et al.
Published: (2024)
Atomic Trajectory Modeling with State Space Models for Biomolecular Dynamics
by: Shi, Liang, et al.
Published: (2026)
by: Shi, Liang, et al.
Published: (2026)
Evaluating representation learning on the protein structure universe
by: Jamasb, Arian R., et al.
Published: (2024)
by: Jamasb, Arian R., et al.
Published: (2024)
Aligning Protein Conformation Ensemble Generation with Physical Feedback
by: Lu, Jiarui, et al.
Published: (2025)
by: Lu, Jiarui, et al.
Published: (2025)
An End-to-End Framework for Molecular Conformation Generation via Bilevel Programming
by: Xu, Minkai, et al.
Published: (2021)
by: Xu, Minkai, et al.
Published: (2021)
Structure Language Models for Protein Conformation Generation
by: Lu, Jiarui, et al.
Published: (2024)
by: Lu, Jiarui, et al.
Published: (2024)
Flexibility-Conditioned Protein Structure Design with Flow Matching
by: Viliuga, Vsevolod, et al.
Published: (2025)
by: Viliuga, Vsevolod, et al.
Published: (2025)
Similar Items
-
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design
by: Chen, Tong, et al.
Published: (2025) -
Gumbel-Softmax Flow Matching with Straight-Through Guidance for Controllable Biological Sequence Generation
by: Tang, Sophia, et al.
Published: (2025) -
Minimal-Action Discrete Schrödinger Bridge Matching for Peptide Sequence Design
by: Goel, Shrey, et al.
Published: (2026) -
AReUReDi: Annealed Rectified Updates for Refining Discrete Flows with Multi-Objective Guidance
by: Chen, Tong, et al.
Published: (2025) -
TR2-D2: Tree Search Guided Trajectory-Aware Fine-Tuning for Discrete Diffusion
by: Tang, Sophia, et al.
Published: (2025)