Stochastic Thermodynamics of Cooperative Biomolecular Machines: Fluctuation Relations and Hidden Detailed Balance Breaking
Fuente:
arXiv
Saved in:
| Main Authors: | Piephoff, D. Evan, Cao, Jianshu |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
First-Passage Time Fluctuation Theorem and Thermodynamic Bound in Cooperative Biomolecular Networks
by: Piephoff, D. Evan, et al.
Published: (2025)
by: Piephoff, D. Evan, et al.
Published: (2025)
What is a chemostat? Insights from hybrid dynamics and stochastic thermodynamics
by: Remlein, Benedikt, et al.
Published: (2025)
by: Remlein, Benedikt, et al.
Published: (2025)
Thermodynamic limits on general far-from-equilibrium molecular templating networks
by: Qureshi, Benjamin, et al.
Published: (2024)
by: Qureshi, Benjamin, et al.
Published: (2024)
Local imperfect feedback control in non-equilibrium biophysical systems enabled by thermodynamic constraints
by: Floyd, Carlos, et al.
Published: (2025)
by: Floyd, Carlos, et al.
Published: (2025)
The generic temperature response of large biochemical networks
by: Voits, Julian B., et al.
Published: (2024)
by: Voits, Julian B., et al.
Published: (2024)
Shortcuts in stochastic systems and control of biophysical processes
by: Ilker, Efe, et al.
Published: (2021)
by: Ilker, Efe, et al.
Published: (2021)
Emergence of generic first-passage time distributions for large Markovian networks
by: Voits, Julian B., et al.
Published: (2026)
by: Voits, Julian B., et al.
Published: (2026)
Time-reversal symmetry breaking in the chemosensory array reveals mechanisms for dissipation-enhanced cooperative sensing
by: Hathcock, David, et al.
Published: (2023)
by: Hathcock, David, et al.
Published: (2023)
Maximum entropy models for patterns of gene expression
by: Sarra, Camilla, et al.
Published: (2024)
by: Sarra, Camilla, et al.
Published: (2024)
Thermodynamic and Stoichiometric Laws Ruling the Fates of Growing Systems
by: Kamimura, Atsushi, et al.
Published: (2023)
by: Kamimura, Atsushi, et al.
Published: (2023)
Transitions and Thermodynamics on Species Graphs of Chemical Reaction Networks
by: Sugie, Keisuke, et al.
Published: (2024)
by: Sugie, Keisuke, et al.
Published: (2024)
Thermodynamic Bounds on Symmetry Breaking in Linear and Catalytic Biochemical Systems
by: Liang, Shiling, et al.
Published: (2022)
by: Liang, Shiling, et al.
Published: (2022)
Intuitive dissection of the Gaussian information bottleneck method with an application to optimal prediction
by: Galstyan, Vahe, et al.
Published: (2025)
by: Galstyan, Vahe, et al.
Published: (2025)
A general mechanism for enhancer-insulator pairing reveals heterogeneous dynamics in long-distant 3D gene regulation
by: Hedström, Lucas, et al.
Published: (2024)
by: Hedström, Lucas, et al.
Published: (2024)
Algebraic and diagrammatic methods for the rule-based modeling of multi-particle complexes
by: Rousseau, Rebecca J., et al.
Published: (2024)
by: Rousseau, Rebecca J., et al.
Published: (2024)
Information geometry of perturbed gradient flow systems on hypergraphs: A perspective towards nonequilibrium physics
by: Loutchko, Dimitri, et al.
Published: (2025)
by: Loutchko, Dimitri, et al.
Published: (2025)
Critical Dynamics and Cyclic Memory Retrieval in Non-reciprocal Hopfield Networks
by: Xue, Shuyue, et al.
Published: (2025)
by: Xue, Shuyue, et al.
Published: (2025)
Latent Thermodynamic Flows: Unified Representation Learning and Generative Modeling of Temperature-Dependent Behaviors from Limited Data
by: Qiu, Yunrui, et al.
Published: (2025)
by: Qiu, Yunrui, et al.
Published: (2025)
Third density and acoustic virial coefficients of helium isotopologues from ab initio calculations
by: Binosi, Daniele, et al.
Published: (2024)
by: Binosi, Daniele, et al.
Published: (2024)
Towards a robust approach to infer causality in molecular systems satisfying detailed balance
by: Del Tatto, Vittorio, et al.
Published: (2025)
by: Del Tatto, Vittorio, et al.
Published: (2025)
Nonadiabatic force matching for alchemical free-energy estimation
by: Rosa-Raíces, Jorge L., et al.
Published: (2025)
by: Rosa-Raíces, Jorge L., et al.
Published: (2025)
Static vs dynamic rough energy landscapes: Where is diffusion faster?
by: Makarov, Dmitrii E., et al.
Published: (2025)
by: Makarov, Dmitrii E., et al.
Published: (2025)
Non-Markovianity increases transition path probability
by: Brünig, Florian N., et al.
Published: (2025)
by: Brünig, Florian N., et al.
Published: (2025)
Fastest first-passage time statistics for time-dependent particle injection
by: Grebenkov, Denis S., et al.
Published: (2025)
by: Grebenkov, Denis S., et al.
Published: (2025)
Continuous Gated First-Passage Processes
by: Scher, Yuval, et al.
Published: (2022)
by: Scher, Yuval, et al.
Published: (2022)
General Theory of Static Response for Markov Jump Processes
by: Aslyamov, Timur, et al.
Published: (2024)
by: Aslyamov, Timur, et al.
Published: (2024)
The Interplay of Heterogeneity and Product Detachment in Templated Polymer Copying
by: Guntoro, Jeremy E. B., et al.
Published: (2024)
by: Guntoro, Jeremy E. B., et al.
Published: (2024)
Good rates from bad coordinates: the exponential average time-dependent rate approach
by: Mazzaferro, Nicodemo, et al.
Published: (2024)
by: Mazzaferro, Nicodemo, et al.
Published: (2024)
Fastest first-passage time for multiple searchers with finite speed
by: Grebenkov, Denis S., et al.
Published: (2026)
by: Grebenkov, Denis S., et al.
Published: (2026)
Diffusion-controlled reactions: an overview
by: Grebenkov, Denis S.
Published: (2023)
by: Grebenkov, Denis S.
Published: (2023)
Pattern stability in reaction-diffusion systems depends on path entropy
by: Heller, Eric R., et al.
Published: (2026)
by: Heller, Eric R., et al.
Published: (2026)
Entropy Production by Underdamped Langevin Dynamics
by: Lyu, Jinghao, et al.
Published: (2024)
by: Lyu, Jinghao, et al.
Published: (2024)
Inference of non-exponential kinetics through stochastic resetting
by: Blumer, Ofir, et al.
Published: (2024)
by: Blumer, Ofir, et al.
Published: (2024)
Optimal information gain at the onset of habituation to repeated stimuli
by: Nicoletti, Giorgio, et al.
Published: (2023)
by: Nicoletti, Giorgio, et al.
Published: (2023)
Hierarchical Reconstruction of Time-arrow from Multi-time Correlations
by: Cheng, Yijia, et al.
Published: (2026)
by: Cheng, Yijia, et al.
Published: (2026)
Arbitrage equilibria in active matter systems
by: Venkatasubramanian, Venkat, et al.
Published: (2024)
by: Venkatasubramanian, Venkat, et al.
Published: (2024)
Quantum criticality in chains of planar rotors with dipolar interactions
by: Serwatka, Tobias, et al.
Published: (2024)
by: Serwatka, Tobias, et al.
Published: (2024)
Thermodynamically Consistent Phase-Field Theory Including Nearest-Neighbor Pair Correlations Explains Failure of Mean-Field Reasoning
by: Blom, Kristian, et al.
Published: (2022)
by: Blom, Kristian, et al.
Published: (2022)
Ising Models of Cooperativity in Muscle Contraction
by: Saadat, Elaheh, et al.
Published: (2026)
by: Saadat, Elaheh, et al.
Published: (2026)
Maximum Entropy Production Principle of Thermodynamics for the Birth and Evolution of Life
by: Sawada, Yasuji, et al.
Published: (2025)
by: Sawada, Yasuji, et al.
Published: (2025)
Similar Items
-
First-Passage Time Fluctuation Theorem and Thermodynamic Bound in Cooperative Biomolecular Networks
by: Piephoff, D. Evan, et al.
Published: (2025) -
What is a chemostat? Insights from hybrid dynamics and stochastic thermodynamics
by: Remlein, Benedikt, et al.
Published: (2025) -
Thermodynamic limits on general far-from-equilibrium molecular templating networks
by: Qureshi, Benjamin, et al.
Published: (2024) -
Local imperfect feedback control in non-equilibrium biophysical systems enabled by thermodynamic constraints
by: Floyd, Carlos, et al.
Published: (2025) -
The generic temperature response of large biochemical networks
by: Voits, Julian B., et al.
Published: (2024)