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Autori principali: Carretero, Ilán, Mahtani, Roshni, Perez-Deben, Silvia, González-Muñoz, José Francisco, Monteagudo, Carlos, Naranjo, Valery, del Amor, Rocío
Natura: Preprint
Pubblicazione: 2025
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Accesso online:https://arxiv.org/abs/2511.19535
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author Carretero, Ilán
Mahtani, Roshni
Perez-Deben, Silvia
González-Muñoz, José Francisco
Monteagudo, Carlos
Naranjo, Valery
del Amor, Rocío
author_facet Carretero, Ilán
Mahtani, Roshni
Perez-Deben, Silvia
González-Muñoz, José Francisco
Monteagudo, Carlos
Naranjo, Valery
del Amor, Rocío
contents Accurate diagnosis of spitzoid tumors (ST) is critical to ensure a favorable prognosis and to avoid both under- and over-treatment. Epigenetic data, particularly DNA methylation, provide a valuable source of information for this task. However, prior studies assume complete data, an unrealistic setting as methylation profiles frequently contain missing entries due to limited coverage and experimental artifacts. Our work challenges these favorable scenarios and introduces ReMAC, an extension of ReMasker designed to tackle classification tasks on high-dimensional data under complete and incomplete regimes. Evaluation on real clinical data demonstrates that ReMAC achieves strong and robust performance compared to competing classification methods in the stratification of ST. Code is available: https://github.com/roshni-mahtani/ReMAC.
format Preprint
id arxiv_https___arxiv_org_abs_2511_19535
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Masked Autoencoder Joint Learning for Robust Spitzoid Tumor Classification
Carretero, Ilán
Mahtani, Roshni
Perez-Deben, Silvia
González-Muñoz, José Francisco
Monteagudo, Carlos
Naranjo, Valery
del Amor, Rocío
Quantitative Methods
Machine Learning
Accurate diagnosis of spitzoid tumors (ST) is critical to ensure a favorable prognosis and to avoid both under- and over-treatment. Epigenetic data, particularly DNA methylation, provide a valuable source of information for this task. However, prior studies assume complete data, an unrealistic setting as methylation profiles frequently contain missing entries due to limited coverage and experimental artifacts. Our work challenges these favorable scenarios and introduces ReMAC, an extension of ReMasker designed to tackle classification tasks on high-dimensional data under complete and incomplete regimes. Evaluation on real clinical data demonstrates that ReMAC achieves strong and robust performance compared to competing classification methods in the stratification of ST. Code is available: https://github.com/roshni-mahtani/ReMAC.
title Masked Autoencoder Joint Learning for Robust Spitzoid Tumor Classification
topic Quantitative Methods
Machine Learning
url https://arxiv.org/abs/2511.19535