Blini: lightweight nucleotide sequence search and dereplication
Fuente:
arXiv
Saved in:
| Main Author: | Lavon, Amit |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Izzy: a high-throughput metagenomic read simulator
by: Lavon, Amit
Published: (2025)
by: Lavon, Amit
Published: (2025)
FrackyFrac: A Standalone UniFrac Calculator
by: Lavon, Amit, et al.
Published: (2024)
by: Lavon, Amit, et al.
Published: (2024)
High nucleotide skew palindromic DNA sequences function as replication origins due to their unzipping propensity
by: Sahu, Parthasarathi, et al.
Published: (2024)
by: Sahu, Parthasarathi, et al.
Published: (2024)
Canonicalization of the E value from BLAST similarity search -- dissimilarity measure and distance function for a metric space of protein sequences
by: Mao, Boryeu
Published: (2025)
by: Mao, Boryeu
Published: (2025)
Fast uncovering of protein sequence diversity from structure
by: Silva, Luca Alessandro, et al.
Published: (2024)
by: Silva, Luca Alessandro, et al.
Published: (2024)
U-FedTomAtt: Ultra-lightweight Federated Learning with Attention for Tomato Disease Recognition
by: George, Romiyal, et al.
Published: (2026)
by: George, Romiyal, et al.
Published: (2026)
De novo peptide sequencing rescoring and FDR estimation with Winnow
by: Mabona, Amandla, et al.
Published: (2025)
by: Mabona, Amandla, et al.
Published: (2025)
tcrLM: a lightweight protein language model for predicting T cell receptor and epitope binding specificity
by: Fang, Xing, et al.
Published: (2024)
by: Fang, Xing, et al.
Published: (2024)
SAGE-FM: A lightweight and interpretable spatial transcriptomics foundation model
by: Zhan, Xianghao, et al.
Published: (2026)
by: Zhan, Xianghao, et al.
Published: (2026)
PatchWorkPlot: simultaneous visualization of local alignments across multiple sequences
by: Pospelova, Mariia, et al.
Published: (2025)
by: Pospelova, Mariia, et al.
Published: (2025)
Validation of Golden Gate assemblies using highly multiplexed Nanopore amplicon sequencing
by: Rojas, Adan A. Ramirez, et al.
Published: (2024)
by: Rojas, Adan A. Ramirez, et al.
Published: (2024)
Efficient design of rna sequences with desired properties, structure, and motifs using a grammar variational autoencoder
by: Zarnaghinaghsh, Narges, et al.
Published: (2025)
by: Zarnaghinaghsh, Narges, et al.
Published: (2025)
Modeling therapy sequence for advanced cancer: A microsimulation approach leveraging Electronic Health Record data
by: Handorf, Elizabeth A., et al.
Published: (2024)
by: Handorf, Elizabeth A., et al.
Published: (2024)
Lightning-fast adaptive immune receptor similarity search by symmetric deletion lookup
by: Chotisorayuth, Touchchai, et al.
Published: (2024)
by: Chotisorayuth, Touchchai, et al.
Published: (2024)
Integrating protein sequence embeddings with structure via graph-based deep learning for single-residue property prediction
by: Michalewicz, Kevin, et al.
Published: (2025)
by: Michalewicz, Kevin, et al.
Published: (2025)
Direct RNA sequence design under codon constraints using expressive tensor-based secondary structure models
by: Fornace, Mark, et al.
Published: (2026)
by: Fornace, Mark, et al.
Published: (2026)
PoET: A generative model of protein families as sequences-of-sequences
by: Truong Jr, Timothy F., et al.
Published: (2023)
by: Truong Jr, Timothy F., et al.
Published: (2023)
Modelling birdsong transmission with methods from molecular sequence analysis
by: Kwong, Anthony, et al.
Published: (2025)
by: Kwong, Anthony, et al.
Published: (2025)
Fast computation of the statistical significance test for spatio-temporal receptive field estimates obtained using spike-triggered averaging of binary pseudo-random sequences
by: Okatan, Murat
Published: (2024)
by: Okatan, Murat
Published: (2024)
Random search with stochastic resetting: when finding the target is not enough
by: Bressloff, Paul C.
Published: (2025)
by: Bressloff, Paul C.
Published: (2025)
Methylation Operation Wizard (MeOW): Identification of differentially methylated regions in long-read sequencing data
by: Zalusky, Miranda PG, et al.
Published: (2024)
by: Zalusky, Miranda PG, et al.
Published: (2024)
Pangenome-guided sequence assembly via binary optimisation
by: Cudby, Josh, et al.
Published: (2025)
by: Cudby, Josh, et al.
Published: (2025)
SBSM-Pro: Support Bio-sequence Machine for Proteins
by: Wang, Yizheng, et al.
Published: (2023)
by: Wang, Yizheng, et al.
Published: (2023)
Density estimation for ordinal biological sequences and its applications
by: Chen, Wei-Chia, et al.
Published: (2024)
by: Chen, Wei-Chia, et al.
Published: (2024)
Accurate de novo sequencing of the modified proteome with OmniNovo
by: Chen, Yuhan, et al.
Published: (2025)
by: Chen, Yuhan, et al.
Published: (2025)
Protein sequence classification using natural language processing techniques
by: Perveen, Huma, et al.
Published: (2024)
by: Perveen, Huma, et al.
Published: (2024)
Transformer-based de novo peptide sequencing for data-independent acquisition mass spectrometry
by: Ebrahimi, Shiva, et al.
Published: (2024)
by: Ebrahimi, Shiva, et al.
Published: (2024)
Single molecule localization microscopy challenge: a biologically inspired benchmark for long-sequence modeling
by: Valeh, Fatemeh, et al.
Published: (2026)
by: Valeh, Fatemeh, et al.
Published: (2026)
Attribution assignment for deep-generative sequence models enables interpretability analysis using positive-only data
by: Frank, Robert, et al.
Published: (2025)
by: Frank, Robert, et al.
Published: (2025)
PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences
by: Buttenschoen, Martin, et al.
Published: (2023)
by: Buttenschoen, Martin, et al.
Published: (2023)
SpanSeq: Similarity-based sequence data splitting method for improved development and assessment of deep learning projects
by: Florensa, Alfred Ferrer, et al.
Published: (2024)
by: Florensa, Alfred Ferrer, et al.
Published: (2024)
Integrating experimental feedback improves generative models for biological sequences
by: Calvanese, Francesco, et al.
Published: (2025)
by: Calvanese, Francesco, et al.
Published: (2025)
Infector characteristics exposed by spatial analysis of SARS-CoV-2 sequence and demographic data analysed at fine geographical scales
by: Gamża, Anna, et al.
Published: (2024)
by: Gamża, Anna, et al.
Published: (2024)
Impact of phylogeny on structural contact inference from protein sequence data
by: Dietler, Nicola, et al.
Published: (2022)
by: Dietler, Nicola, et al.
Published: (2022)
A statistical significance test for spatio-temporal receptive field estimates obtained using spike-triggered averaging of binary pseudo-random sequences
by: Okatan, Murat
Published: (2024)
by: Okatan, Murat
Published: (2024)
Two fitness inference schemes compared using allele frequencies from 1,068,391 sequences sampled in the UK during the COVID-19 pandemic
by: Zeng, Hong-Li, et al.
Published: (2024)
by: Zeng, Hong-Li, et al.
Published: (2024)
IgCraft: A versatile sequence generation framework for antibody discovery and engineering
by: Greenig, Matthew, et al.
Published: (2025)
by: Greenig, Matthew, et al.
Published: (2025)
Generative power of a protein language model trained on multiple sequence alignments
by: Sgarbossa, Damiano, et al.
Published: (2022)
by: Sgarbossa, Damiano, et al.
Published: (2022)
Two-Stage Decoding Algorithm and Bounds for Group Testing with Prior Statistics
by: Portnoy, Ayelet C., et al.
Published: (2024)
by: Portnoy, Ayelet C., et al.
Published: (2024)
Target search on networks-within-networks with applications to protein-DNA interactions
by: Hedström, Lucas, et al.
Published: (2024)
by: Hedström, Lucas, et al.
Published: (2024)
Similar Items
-
Izzy: a high-throughput metagenomic read simulator
by: Lavon, Amit
Published: (2025) -
FrackyFrac: A Standalone UniFrac Calculator
by: Lavon, Amit, et al.
Published: (2024) -
High nucleotide skew palindromic DNA sequences function as replication origins due to their unzipping propensity
by: Sahu, Parthasarathi, et al.
Published: (2024) -
Canonicalization of the E value from BLAST similarity search -- dissimilarity measure and distance function for a metric space of protein sequences
by: Mao, Boryeu
Published: (2025) -
Fast uncovering of protein sequence diversity from structure
by: Silva, Luca Alessandro, et al.
Published: (2024)