Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models in Epidemiological Research
Fuente:
arXiv
Saved in:
| Main Authors: | Wieland, Vincent, Wassmuth, Nils, Contento, Lorenzo, Kühn, Martin, Hasenauer, Jan |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Foliar Uptake of Biocides: Statistical Assessment of Compartmental and Diffusion-Based Models
by: Sangoi, Enrico, et al.
Published: (2025)
by: Sangoi, Enrico, et al.
Published: (2025)
Exploration of methods for computing sensitivities in ODE models at dynamic and steady states
by: Lakrisenko, Polina, et al.
Published: (2024)
by: Lakrisenko, Polina, et al.
Published: (2024)
Assessment of Uncertainty Quantification in Universal Differential Equations
by: Schmid, Nina, et al.
Published: (2024)
by: Schmid, Nina, et al.
Published: (2024)
PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems
by: Jost, Paul Jonas, et al.
Published: (2025)
by: Jost, Paul Jonas, et al.
Published: (2025)
Compositional amortized inference for large-scale hierarchical Bayesian models
by: Arruda, Jonas, et al.
Published: (2025)
by: Arruda, Jonas, et al.
Published: (2025)
Simulation-based Inference for Cardiovascular Models
by: Wehenkel, Antoine, et al.
Published: (2023)
by: Wehenkel, Antoine, et al.
Published: (2023)
Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows's $\mathit{C_p}$
by: Vanhoefer, Jakob, et al.
Published: (2025)
by: Vanhoefer, Jakob, et al.
Published: (2025)
Reduced-Precision Stochastic Simulation for Mathematical Biology
by: Kimpson, Tom, et al.
Published: (2026)
by: Kimpson, Tom, et al.
Published: (2026)
Structural Identifiability of Compartmental Models: Recent Progress and Future Directions
by: Meshkat, Nicolette, et al.
Published: (2025)
by: Meshkat, Nicolette, et al.
Published: (2025)
Guidelines in Wastewater-based Epidemiology of SARS-CoV-2 with Diagnosis
by: Fatima, Madiha, et al.
Published: (2023)
by: Fatima, Madiha, et al.
Published: (2023)
Non-Negative Universal Differential Equations With Applications in Systems Biology
by: Philipps, Maren, et al.
Published: (2024)
by: Philipps, Maren, et al.
Published: (2024)
Comparing AI versus Optimization Workflows for Simulation-Based Inference of Spatial-Stochastic Systems
by: Ramirez-Sierra, Michael A., et al.
Published: (2024)
by: Ramirez-Sierra, Michael A., et al.
Published: (2024)
Epidemiological Agent-Based Modelling Software (Epiabm)
by: Gallagher, Kit, et al.
Published: (2022)
by: Gallagher, Kit, et al.
Published: (2022)
Beyond Bayesian Inference: The Correlation Integral Likelihood Framework and Gradient Flow Methods for Deterministic Sampling
by: Gwiazda, Piotr, et al.
Published: (2025)
by: Gwiazda, Piotr, et al.
Published: (2025)
TumorPred: A Computational Framework Implemented via an R/Shiny Web Application for Parameter Estimation and Sensitivity Analysis in Compartmental Brain Modeling
by: Wickramasinghe, Charuka D., et al.
Published: (2025)
by: Wickramasinghe, Charuka D., et al.
Published: (2025)
Simulation-free Structure Learning for Stochastic Dynamics
by: Rimawi-Fine, Noah El, et al.
Published: (2025)
by: Rimawi-Fine, Noah El, et al.
Published: (2025)
GRIMM: Genetic stRatification for Inference in Molecular Modeling
by: Babjac, Ashley, et al.
Published: (2026)
by: Babjac, Ashley, et al.
Published: (2026)
Cardiometabolic Risk Factors in South Asians: An Epidemiological and Anthropological Study in an Urban Populace of Eastern India
by: Yasmin, Karishma
Published: (2024)
by: Yasmin, Karishma
Published: (2024)
A Platform for the Biomedical Application of Large Language Models
by: Lobentanzer, Sebastian, et al.
Published: (2023)
by: Lobentanzer, Sebastian, et al.
Published: (2023)
A Comprehensive Guide to Simulation-based Inference in Computational Biology
by: Wang, Xiaoyu, et al.
Published: (2024)
by: Wang, Xiaoyu, et al.
Published: (2024)
Sequential Inference of Hospitalization Electronic Health Records Using Probabilistic Models
by: Kaplan, Alan D., et al.
Published: (2024)
by: Kaplan, Alan D., et al.
Published: (2024)
Use of Topological Data Analysis for the Detection of Phenomenological Bifurcations in Stochastic Epidemiological Models
by: Tanweer, Sunia, et al.
Published: (2025)
by: Tanweer, Sunia, et al.
Published: (2025)
Data mining of public genomic repositories: harnessing off-target reads to expand microbial pathogen genomic resources
by: Richard, Damien, et al.
Published: (2025)
by: Richard, Damien, et al.
Published: (2025)
Stochastic Model of siRNA Endosomal Escape Mediated by Fusogenic Peptides in OVCAR-3
by: Yadav, Nisha, et al.
Published: (2024)
by: Yadav, Nisha, et al.
Published: (2024)
Frailty Assessment in Aortic Stenosis based on Dynamic Interconnection between Cardiac and Motor Systems
by: Arrué, Patricio, et al.
Published: (2024)
by: Arrué, Patricio, et al.
Published: (2024)
TACK: A statistical evaluation of degradation activity on a novel TArgeting Chimeras Knowledge dataset
by: Ribes, Stefano, et al.
Published: (2026)
by: Ribes, Stefano, et al.
Published: (2026)
Comparing Bayesian and Frequentist Inference in Biological Models: A Comparative Analysis of Accuracy, Uncertainty, and Identifiability
by: Mohammed, Mohammed A. Y., et al.
Published: (2025)
by: Mohammed, Mohammed A. Y., et al.
Published: (2025)
Dynamical Inference of Cell Size Regulation Parameters
by: Nieto, Cesar, et al.
Published: (2025)
by: Nieto, Cesar, et al.
Published: (2025)
The Impact of Heatwaves on Population Health: A Large Language Model-Enhanced Agent-Based Simulation
by: Liu, Yuanhao, et al.
Published: (2026)
by: Liu, Yuanhao, et al.
Published: (2026)
Stochasticity and Practical Identifiability in Epidemic Models: A Monte Carlo Perspective
by: Mattamira, Chiara, et al.
Published: (2025)
by: Mattamira, Chiara, et al.
Published: (2025)
ALBATROSS: Cheap Filtration Based Geometry via Stochastic Sub-Sampling
by: Stier, Andrew J., et al.
Published: (2025)
by: Stier, Andrew J., et al.
Published: (2025)
Network Pharmacology Framework Characterizes Polypharmacological Properties of Dietary Flavonoids: Integration of Computational, Experimental, and Epidemiological Evidence
by: Fujisaki, Koyo, et al.
Published: (2026)
by: Fujisaki, Koyo, et al.
Published: (2026)
A Selective Review of Modern Stochastic Modeling: SDE/SPDE Numerics, Data-Driven Identification, and Generative Methods with Applications in Biomathematics
by: Sabbar, Yassine, et al.
Published: (2025)
by: Sabbar, Yassine, et al.
Published: (2025)
PhysiBoSS-Models: A database for multiscale models
by: Noel, Vincent, et al.
Published: (2025)
by: Noel, Vincent, et al.
Published: (2025)
Integrating Probabilistic Trees and Causal Networks for Clinical and Epidemiological Data
by: Zahoor, Sheresh, et al.
Published: (2025)
by: Zahoor, Sheresh, et al.
Published: (2025)
Reducing Uncertainty Through Mutual Information in Structural and Systems Biology
by: Zaballa, Vincent D., et al.
Published: (2024)
by: Zaballa, Vincent D., et al.
Published: (2024)
Stochastic network epidemic model and particle filter: General framework and application to influenza in Japan
by: Haq, Ihtisham Ul, et al.
Published: (2026)
by: Haq, Ihtisham Ul, et al.
Published: (2026)
Realizing Common Random Numbers: Event-Keyed Hashing for Causally Valid Stochastic Models
by: Buffalo, Vince, et al.
Published: (2026)
by: Buffalo, Vince, et al.
Published: (2026)
A Modelling Assessment of the Impact of Control Measures on Simulated Foot-and-Mouth Disease Spread in Mato Grosso do Sul, Brazil
by: Cardenas, Nicolas C., et al.
Published: (2026)
by: Cardenas, Nicolas C., et al.
Published: (2026)
Data Analysis and Modeling for Transitioning Between Laboratory Methods for Detecting SARS-CoV-2 in Wastewater
by: Warns, Maria M., et al.
Published: (2025)
by: Warns, Maria M., et al.
Published: (2025)
Similar Items
-
Foliar Uptake of Biocides: Statistical Assessment of Compartmental and Diffusion-Based Models
by: Sangoi, Enrico, et al.
Published: (2025) -
Exploration of methods for computing sensitivities in ODE models at dynamic and steady states
by: Lakrisenko, Polina, et al.
Published: (2024) -
Assessment of Uncertainty Quantification in Universal Differential Equations
by: Schmid, Nina, et al.
Published: (2024) -
PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems
by: Jost, Paul Jonas, et al.
Published: (2025) -
Compositional amortized inference for large-scale hierarchical Bayesian models
by: Arruda, Jonas, et al.
Published: (2025)