DMAGT: Unveiling miRNA-Drug Associations by Integrating SMILES and RNA Sequence Structures through Graph Transformer Models
Fuente:
arXiv
Enregistré dans:
| Auteur principal: | Zhang, Ziqi |
|---|---|
| Format: | Preprint |
| Publié: |
2025
|
| Sujets: | |
| Accès en ligne: | |
| Tags: |
Ajouter un tag
Pas de tags, Soyez le premier à ajouter un tag!
|
Documents similaires
KITE-DDI: A Knowledge graph Integrated Transformer Model for accurately predicting Drug-Drug Interaction Events from Drug SMILES and Biomedical Knowledge Graph
par: Tamir, Azwad, et autres
Publié: (2024)
par: Tamir, Azwad, et autres
Publié: (2024)
PAIR-Former: Budgeted Relational Multi-Instance Learning for Functional miRNA Target Prediction
par: Yin, Jiaqi, et autres
Publié: (2026)
par: Yin, Jiaqi, et autres
Publié: (2026)
AI-Driven Drug Repurposing through miRNA-mRNA Relation
par: Manoharan, Sharanya, et autres
Publié: (2025)
par: Manoharan, Sharanya, et autres
Publié: (2025)
When SMILES have Language: Drug Classification using Text Classification Methods on Drug SMILES Strings
par: Wasi, Azmine Toushik, et autres
Publié: (2024)
par: Wasi, Azmine Toushik, et autres
Publié: (2024)
Deciphering miRNA‐lncRNA‐mRNA interaction through experimental validation of miRNAs, lncRNAs, and miRNA targets on mRNAs in Cajanus cajan
par: M. R. Chowdhury, et autres
Publié: (2024)
par: M. R. Chowdhury, et autres
Publié: (2024)
SMILES-Mamba: Chemical Mamba Foundation Models for Drug ADMET Prediction
par: Xu, Bohao, et autres
Publié: (2024)
par: Xu, Bohao, et autres
Publié: (2024)
ML‐Based Screening of miRNA Inhibitors and Intervention of lncRNA/miRNA/mRNA Axis in Oncogenic KRAS‐Associated Colorectal Cancer
par: Prasanna Srinivasan Ramalingam, et autres
Publié: (2024)
par: Prasanna Srinivasan Ramalingam, et autres
Publié: (2024)
Drug Discovery SMILES-to-Pharmacokinetics Diffusion Models with Deep Molecular Understanding
par: Hu, Bing, et autres
Publié: (2024)
par: Hu, Bing, et autres
Publié: (2024)
Soft Graph Clustering for single-cell RNA Sequencing Data
par: Xu, Ping, et autres
Publié: (2025)
par: Xu, Ping, et autres
Publié: (2025)
Integrated Analysis of mRNA and miRNA Associated with Reproduction in Female and Male Gonads in Abalone ().
par: Huang, Jianfang, et autres
Publié: (2025)
par: Huang, Jianfang, et autres
Publié: (2025)
Accelerating Drug Safety Assessment using Bidirectional-LSTM for SMILES Data
par: Rao, K. Venkateswara, et autres
Publié: (2024)
par: Rao, K. Venkateswara, et autres
Publié: (2024)
Exosome miRNA Profiles: The Reduced Expression of miRNA ‐27a‐5p and Predictive miRNAs for Gestational Diabetes Mellitus
par: Yupei Shen, et autres
Publié: (2025)
par: Yupei Shen, et autres
Publié: (2025)
RiboGen: RNA Sequence and Structure Co-Generation with Equivariant MultiFlow
par: Rubin, Dana, et autres
Publié: (2025)
par: Rubin, Dana, et autres
Publié: (2025)
From Syntax to Semantics: Unveiling the Emergence of Chirality in SMILES Translation Models
par: Li, Zehao, et autres
Publié: (2026)
par: Li, Zehao, et autres
Publié: (2026)
UniMAP: Universal SMILES-Graph Representation Learning
par: Feng, Shikun, et autres
Publié: (2023)
par: Feng, Shikun, et autres
Publié: (2023)
Latent Diffusion Models for Controllable RNA Sequence Generation
par: Huang, Kaixuan, et autres
Publié: (2024)
par: Huang, Kaixuan, et autres
Publié: (2024)
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
par: Nori, Divya, et autres
Publié: (2024)
par: Nori, Divya, et autres
Publié: (2024)
Evaluating miRNA Sequencing and Integrative Proteomics for Identifying Plasma miRNAs as Potential Pharmacodynamic Biomarkers of IFNβ ‐1a Biologics
par: Mai Mehanna, et autres
Publié: (2025)
par: Mai Mehanna, et autres
Publié: (2025)
RNA Secondary Structure Prediction Using Transformer-Based Deep Learning Models
par: Zhou, Yanlin, et autres
Publié: (2024)
par: Zhou, Yanlin, et autres
Publié: (2024)
RNA-GPT: Multimodal Generative System for RNA Sequence Understanding
par: Xiao, Yijia, et autres
Publié: (2024)
par: Xiao, Yijia, et autres
Publié: (2024)
CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction
par: Han, Rong, et autres
Publié: (2024)
par: Han, Rong, et autres
Publié: (2024)
Integrated Transcriptome‐Wide and miRNA Sequencing Analysis of Systemic Infection in Alzheimer's Disease Brain
par: Giulia Pegoraro
Publié: (2025)
par: Giulia Pegoraro
Publié: (2025)
Identification of miRNA Biomarkers Associated With Staphylococcal Musculoskeletal Infections
par: Claudia Siverino, et autres
Publié: (2025)
par: Claudia Siverino, et autres
Publié: (2025)
miRNA Sensor HuR Compartmentalizes Ago2‐Uncoupled miRNAs to Lipid Droplets to Buffer miRNA Activity in Mammalian Cells
par: Sreemoyee Chakraborty, et autres
Publié: (2026)
par: Sreemoyee Chakraborty, et autres
Publié: (2026)
Unveiling Privacy Vulnerabilities: Investigating the Role of Structure in Graph Data
par: Yuan, Hanyang, et autres
Publié: (2024)
par: Yuan, Hanyang, et autres
Publié: (2024)
Curriculum-Augmented GFlowNets For mRNA Sequence Generation
par: Laajil, Aya, et autres
Publié: (2025)
par: Laajil, Aya, et autres
Publié: (2025)
mRNA2vec: mRNA Embedding with Language Model in the 5'UTR-CDS for mRNA Design
par: Zhang, Honggen, et autres
Publié: (2024)
par: Zhang, Honggen, et autres
Publié: (2024)
RiboSphere: Learning Unified and Efficient Representations of RNA Structures
par: Zhang, Zhou, et autres
Publié: (2026)
par: Zhang, Zhou, et autres
Publié: (2026)
Fighter: Unveiling the Graph Convolutional Nature of Transformers in Time Series Modeling
par: Zhang, Chen, et autres
Publié: (2025)
par: Zhang, Chen, et autres
Publié: (2025)
Exosomal miRNA‐21‐5p and miRNA‐21‐3p as key biomarkers of myocardial infarction
par: Reza Sahebi, et autres
Publié: (2024)
par: Reza Sahebi, et autres
Publié: (2024)
SMI-Editor: Edit-based SMILES Language Model with Fragment-level Supervision
par: Zheng, Kangjie, et autres
Publié: (2024)
par: Zheng, Kangjie, et autres
Publié: (2024)
Leveraging Partial SMILES Validation Scheme for Enhanced Drug Design in Reinforcement Learning Frameworks
par: Wang, Xinyu, et autres
Publié: (2025)
par: Wang, Xinyu, et autres
Publié: (2025)
GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models
par: Qiu, Mufan, et autres
Publié: (2025)
par: Qiu, Mufan, et autres
Publié: (2025)
Predicting Polymer Solubility in Solvents Using SMILES Strings
par: Reinhard, Andrew
Publié: (2025)
par: Reinhard, Andrew
Publié: (2025)
Improving Chemical Understanding of LLMs via SMILES Parsing
par: Jang, Yunhui, et autres
Publié: (2025)
par: Jang, Yunhui, et autres
Publié: (2025)
Teaching Language Models Mechanistic Explainability Through MechSMILES
par: Neukomm, Théo A., et autres
Publié: (2025)
par: Neukomm, Théo A., et autres
Publié: (2025)
Supporting information Single cell microfluidic quantification of miRNA-21 and miRNA-34a reveals miRNA interactions in small airway epithelial cells and fibroblasts from COPD patients
par: Ho, Vanessa, et autres
Publié: (2026)
par: Ho, Vanessa, et autres
Publié: (2026)
A Comprehensive Benchmark for RNA 3D Structure-Function Modeling
par: Wyss, Luis, et autres
Publié: (2025)
par: Wyss, Luis, et autres
Publié: (2025)
miRNA, phytometabolites and disease: Connecting the dots
par: Srutee Ramprosand, et autres
Publié: (2024)
par: Srutee Ramprosand, et autres
Publié: (2024)
Potential of miRNA as Imaging Targets for PET
par: Simon H. Zientek, et autres
Publié: (2024)
par: Simon H. Zientek, et autres
Publié: (2024)
Documents similaires
-
KITE-DDI: A Knowledge graph Integrated Transformer Model for accurately predicting Drug-Drug Interaction Events from Drug SMILES and Biomedical Knowledge Graph
par: Tamir, Azwad, et autres
Publié: (2024) -
PAIR-Former: Budgeted Relational Multi-Instance Learning for Functional miRNA Target Prediction
par: Yin, Jiaqi, et autres
Publié: (2026) -
AI-Driven Drug Repurposing through miRNA-mRNA Relation
par: Manoharan, Sharanya, et autres
Publié: (2025) -
When SMILES have Language: Drug Classification using Text Classification Methods on Drug SMILES Strings
par: Wasi, Azmine Toushik, et autres
Publié: (2024) -
Deciphering miRNA‐lncRNA‐mRNA interaction through experimental validation of miRNAs, lncRNAs, and miRNA targets on mRNAs in Cajanus cajan
par: M. R. Chowdhury, et autres
Publié: (2024)