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Bibliographic Details
Main Author: Maxime, Manzi Kevin
Format: Preprint
Published: 2025
Subjects:
Online Access:https://arxiv.org/abs/2512.08613
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author Maxime, Manzi Kevin
author_facet Maxime, Manzi Kevin
contents Predicting protein secondary structures such as alpha helices, beta sheets, and coils from amino acid sequences is essential for understanding protein function. This work presents a transformer-based model that applies attention mechanisms to protein sequence data to predict structural motifs. A sliding-window data augmentation technique is used on the CB513 dataset to expand the training samples. The transformer shows strong ability to generalize across variable-length sequences while effectively capturing both local and long-range residue interactions.
format Preprint
id arxiv_https___arxiv_org_abs_2512_08613
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Protein Secondary Structure Prediction Using Transformers
Maxime, Manzi Kevin
Artificial Intelligence
Predicting protein secondary structures such as alpha helices, beta sheets, and coils from amino acid sequences is essential for understanding protein function. This work presents a transformer-based model that applies attention mechanisms to protein sequence data to predict structural motifs. A sliding-window data augmentation technique is used on the CB513 dataset to expand the training samples. The transformer shows strong ability to generalize across variable-length sequences while effectively capturing both local and long-range residue interactions.
title Protein Secondary Structure Prediction Using Transformers
topic Artificial Intelligence
url https://arxiv.org/abs/2512.08613