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Main Authors: Castro-de-Araujo, Luis FS, Gillespie, Nathan, Neale, Michael C, Bates, Timothy
Format: Preprint
Published: 2025
Subjects:
Online Access:https://arxiv.org/abs/2512.11063
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author Castro-de-Araujo, Luis FS
Gillespie, Nathan
Neale, Michael C
Bates, Timothy
author_facet Castro-de-Araujo, Luis FS
Gillespie, Nathan
Neale, Michael C
Bates, Timothy
contents Structural Equation Modeling (SEM) is a flexible statistical technique with multiple applications, including behavioral genetics and social sciences. Building on the original design of the umx package, which improved accessibility to OpenMx by specifying a concise syntax, umx v4.5 extends functionality for longitudinal and causal twin designs while improving interoperability with graphical modelling tools such as Onyx. New capabilities include: classic and modern cross-lagged panel models; Mendelian Randomization Direction-of-Causation (MR-DoC) twin models incorporating polygenic scores as instruments; support for definition variables directly in umxRAM(); a workflow for importing paths from Ωnyx; a dedicated function for incorporating censored variables' data into models, particularly valuable in biomarker research; improved covariate placeholder handling for definition variables; sex-limitation modelling across five twin groups, accommodating quantitative and qualitative sex differences; and covariate residualization in wide- or long-format data. These new functionalities accelerate reproducible, reliable, publication-ready twin and family modelling, and integrated journal-quality reporting, thereby lowering barriers to genetic epidemiological analyzes.
format Preprint
id arxiv_https___arxiv_org_abs_2512_11063
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle umx version 4.5: Extending Twin and Path-Based SEM in R with CLPM, MR-DoC, Definition Variables, $Ω$nyx Integration, and Censored Distributions
Castro-de-Araujo, Luis FS
Gillespie, Nathan
Neale, Michael C
Bates, Timothy
Applications
Structural Equation Modeling (SEM) is a flexible statistical technique with multiple applications, including behavioral genetics and social sciences. Building on the original design of the umx package, which improved accessibility to OpenMx by specifying a concise syntax, umx v4.5 extends functionality for longitudinal and causal twin designs while improving interoperability with graphical modelling tools such as Onyx. New capabilities include: classic and modern cross-lagged panel models; Mendelian Randomization Direction-of-Causation (MR-DoC) twin models incorporating polygenic scores as instruments; support for definition variables directly in umxRAM(); a workflow for importing paths from Ωnyx; a dedicated function for incorporating censored variables' data into models, particularly valuable in biomarker research; improved covariate placeholder handling for definition variables; sex-limitation modelling across five twin groups, accommodating quantitative and qualitative sex differences; and covariate residualization in wide- or long-format data. These new functionalities accelerate reproducible, reliable, publication-ready twin and family modelling, and integrated journal-quality reporting, thereby lowering barriers to genetic epidemiological analyzes.
title umx version 4.5: Extending Twin and Path-Based SEM in R with CLPM, MR-DoC, Definition Variables, $Ω$nyx Integration, and Censored Distributions
topic Applications
url https://arxiv.org/abs/2512.11063