Gespeichert in:
Bibliographische Detailangaben
Hauptverfasser: Subedi, Nischal, Kerstetter, Ember, Li, Winnie, Murphy, Silo
Format: Preprint
Veröffentlicht: 2025
Schlagworte:
Online-Zugang:https://arxiv.org/abs/2512.12947
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
_version_ 1866911318977544192
author Subedi, Nischal
Kerstetter, Ember
Li, Winnie
Murphy, Silo
author_facet Subedi, Nischal
Kerstetter, Ember
Li, Winnie
Murphy, Silo
contents Graph Convolutional Networks (GCNs) have become a standard approach for semi-supervised node classification, yet practitioners lack clear guidance on when GCNs provide meaningful improvements over simpler baselines. We present a diagnostic study using the Amazon Computers co-purchase data to understand when and why GCNs help. Through systematic experiments with simulated label scarcity, feature ablation, and per-class analysis, we find that GCN performance depends critically on the interaction between graph homophily and feature quality. GCNs provide the largest gains under extreme label scarcity, where they leverage neighborhood structure to compensate for limited supervision. Surprisingly, GCNs can match their original performance even when node features are replaced with random noise, suggesting that structure alone carries sufficient signal on highly homophilous graphs. However, GCNs hurt performance when homophily is low and features are already strong, as noisy neighbors corrupt good predictions. Our quadrant analysis reveals that GCNs help in three of four conditions and only hurt when low homophily meets strong features. These findings offer practical guidance for practitioners deciding whether to adopt graph-based methods.
format Preprint
id arxiv_https___arxiv_org_abs_2512_12947
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Understanding When Graph Convolutional Networks Help: A Diagnostic Study on Label Scarcity and Structural Properties
Subedi, Nischal
Kerstetter, Ember
Li, Winnie
Murphy, Silo
Machine Learning
Applications
Graph Convolutional Networks (GCNs) have become a standard approach for semi-supervised node classification, yet practitioners lack clear guidance on when GCNs provide meaningful improvements over simpler baselines. We present a diagnostic study using the Amazon Computers co-purchase data to understand when and why GCNs help. Through systematic experiments with simulated label scarcity, feature ablation, and per-class analysis, we find that GCN performance depends critically on the interaction between graph homophily and feature quality. GCNs provide the largest gains under extreme label scarcity, where they leverage neighborhood structure to compensate for limited supervision. Surprisingly, GCNs can match their original performance even when node features are replaced with random noise, suggesting that structure alone carries sufficient signal on highly homophilous graphs. However, GCNs hurt performance when homophily is low and features are already strong, as noisy neighbors corrupt good predictions. Our quadrant analysis reveals that GCNs help in three of four conditions and only hurt when low homophily meets strong features. These findings offer practical guidance for practitioners deciding whether to adopt graph-based methods.
title Understanding When Graph Convolutional Networks Help: A Diagnostic Study on Label Scarcity and Structural Properties
topic Machine Learning
Applications
url https://arxiv.org/abs/2512.12947