Enhancing Decision-Making in Windows PE Malware Classification During Dataset Shifts with Uncertainty Estimation

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Main Authors: Yumlembam, Rahul, Issac, Biju, Jacob, Seibu Mary
Format: Preprint
Published: 2025
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author Yumlembam, Rahul
Issac, Biju
Jacob, Seibu Mary
author_facet Yumlembam, Rahul
Issac, Biju
Jacob, Seibu Mary
contents Artificial intelligence techniques have achieved strong performance in classifying Windows Portable Executable (PE) malware, but their reliability often degrades under dataset shifts, leading to misclassifications with severe security consequences. To address this, we enhance an existing LightGBM (LGBM) malware detector by integrating Neural Networks (NN), PriorNet, and Neural Network Ensembles, evaluated across three benchmark datasets: EMBER, BODMAS, and UCSB. The UCSB dataset, composed mainly of packed malware, introduces a substantial distributional shift relative to EMBER and BODMAS, making it a challenging testbed for robustness. We study uncertainty-aware decision strategies, including probability thresholding, PriorNet, ensemble-derived estimates, and Inductive Conformal Evaluation (ICE). Our main contribution is the use of ensemble-based uncertainty estimates as Non-Conformity Measures within ICE, combined with a novel threshold optimisation method. On the UCSB dataset, where the shift is most severe, the state-of-the-art probability-based ICE (SOTA) yields an incorrect acceptance rate (IA%) of 22.8%. In contrast, our method reduces this to 16% a relative reduction of about 30% while maintaining competitive correct acceptance rates (CA%). These results demonstrate that integrating ensemble-based uncertainty with conformal prediction provides a more reliable safeguard against misclassifications under extreme dataset shifts, particularly in the presence of packed malware, thereby offering practical benefits for real-world security operations.
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id arxiv_https___arxiv_org_abs_2512_18495
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Enhancing Decision-Making in Windows PE Malware Classification During Dataset Shifts with Uncertainty Estimation
Yumlembam, Rahul
Issac, Biju
Jacob, Seibu Mary
Cryptography and Security
Artificial Intelligence
Artificial intelligence techniques have achieved strong performance in classifying Windows Portable Executable (PE) malware, but their reliability often degrades under dataset shifts, leading to misclassifications with severe security consequences. To address this, we enhance an existing LightGBM (LGBM) malware detector by integrating Neural Networks (NN), PriorNet, and Neural Network Ensembles, evaluated across three benchmark datasets: EMBER, BODMAS, and UCSB. The UCSB dataset, composed mainly of packed malware, introduces a substantial distributional shift relative to EMBER and BODMAS, making it a challenging testbed for robustness. We study uncertainty-aware decision strategies, including probability thresholding, PriorNet, ensemble-derived estimates, and Inductive Conformal Evaluation (ICE). Our main contribution is the use of ensemble-based uncertainty estimates as Non-Conformity Measures within ICE, combined with a novel threshold optimisation method. On the UCSB dataset, where the shift is most severe, the state-of-the-art probability-based ICE (SOTA) yields an incorrect acceptance rate (IA%) of 22.8%. In contrast, our method reduces this to 16% a relative reduction of about 30% while maintaining competitive correct acceptance rates (CA%). These results demonstrate that integrating ensemble-based uncertainty with conformal prediction provides a more reliable safeguard against misclassifications under extreme dataset shifts, particularly in the presence of packed malware, thereby offering practical benefits for real-world security operations.
title Enhancing Decision-Making in Windows PE Malware Classification During Dataset Shifts with Uncertainty Estimation
topic Cryptography and Security
Artificial Intelligence
url https://arxiv.org/abs/2512.18495