An Allele-Centric Pan-Graph-Matrix Representation for Scalable Pangenome Analysis
Fuente:
arXiv
Saved in:
| Main Author: | Garrone, Roberto |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Residual-Entropy Accounting for Routed Atom-Budgeted Learned Indexes
by: Alpay, Faruk, et al.
Published: (2026)
by: Alpay, Faruk, et al.
Published: (2026)
Memento Filter: A Fast, Dynamic, and Robust Range Filter
by: Eslami, Navid, et al.
Published: (2024)
by: Eslami, Navid, et al.
Published: (2024)
Let them have CAKES: A Cutting-Edge Algorithm for Scalable, Efficient, and Exact Search on Big Data
by: Prior, Morgan E., et al.
Published: (2023)
by: Prior, Morgan E., et al.
Published: (2023)
Stochastic Indexing Primitives for Non-Deterministic Molecular Archives
by: Alpay, Faruk, et al.
Published: (2026)
by: Alpay, Faruk, et al.
Published: (2026)
Community-Aware Vertex Ordering for Reference-Based Graph Compression: A Cross-Encoder Empirical Study
by: Dubuisson, Jimmy
Published: (2026)
by: Dubuisson, Jimmy
Published: (2026)
Huffman-Bucket Sketch: A Simple $O(m)$ Algorithm for Cardinality Estimation
by: Karppa, Matti
Published: (2026)
by: Karppa, Matti
Published: (2026)
Binary Jumbled Indexing: Suffix tree histogram
by: Cunha, Luís, et al.
Published: (2024)
by: Cunha, Luís, et al.
Published: (2024)
Predicting Memory Demands of BDD Operations using Maximum Graph Cuts (Extended Paper)
by: Sølvsten, Steffan Christ, et al.
Published: (2023)
by: Sølvsten, Steffan Christ, et al.
Published: (2023)
Multi-variable Quantification of BDDs in External Memory using Nested Sweeping (Extended Paper)
by: Sølvsten, Steffan Christ, et al.
Published: (2024)
by: Sølvsten, Steffan Christ, et al.
Published: (2024)
Classification via Two-Way Comparisons
by: Chrobak, Marek, et al.
Published: (2023)
by: Chrobak, Marek, et al.
Published: (2023)
An Optimized Path Planning of Manipulator Using Spline Curves and Real Quantifier Elimination Based on Comprehensive Gröbner Systems
by: Shirato, Yusuke, et al.
Published: (2024)
by: Shirato, Yusuke, et al.
Published: (2024)
Optimizing Exact String Matching via Statistical Anchoring
by: Garraoui, Omar
Published: (2025)
by: Garraoui, Omar
Published: (2025)
Efficient Binary Decision Diagram Manipulation in External Memory
by: Sølvsten, Steffan Christ, et al.
Published: (2021)
by: Sølvsten, Steffan Christ, et al.
Published: (2021)
Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child Orientation
by: Urata, Tsuyoshi, et al.
Published: (2024)
by: Urata, Tsuyoshi, et al.
Published: (2024)
The Merkle Mountain Belt
by: Cevallos, Alfonso, et al.
Published: (2025)
by: Cevallos, Alfonso, et al.
Published: (2025)
Competitive Data-Structure Dynamization
by: Mathieu, Claire, et al.
Published: (2020)
by: Mathieu, Claire, et al.
Published: (2020)
An Effective Trajectory Planning and an Optimized Path Planning for a 6-Degree-of-Freedom Robot Manipulator
by: Okazaki, Takumu, et al.
Published: (2025)
by: Okazaki, Takumu, et al.
Published: (2025)
Adaptive Indexing for Approximate Query Processing in Exploratory Data Analysis
by: Maroulis, Stavros, et al.
Published: (2025)
by: Maroulis, Stavros, et al.
Published: (2025)
A Simple and Efficient Algorithm for Sorting Signed Permutations by Reversals
by: Swenson, Krister M.
Published: (2024)
by: Swenson, Krister M.
Published: (2024)
Optimal Online Bipartite Matching in Degree-2 Graphs
by: Bhangale, Amey, et al.
Published: (2025)
by: Bhangale, Amey, et al.
Published: (2025)
Large Language Model Meets Graph Neural Network in Knowledge Distillation
by: Hu, Shengxiang, et al.
Published: (2024)
by: Hu, Shengxiang, et al.
Published: (2024)
Adjacency Labeling Schemes for Small Classes
by: Bonnet, Édouard, et al.
Published: (2024)
by: Bonnet, Édouard, et al.
Published: (2024)
Symbolic Model Checking in External Memory
by: Sølvsten, Steffan Christ, et al.
Published: (2025)
by: Sølvsten, Steffan Christ, et al.
Published: (2025)
Patricia's Bad Distributions
by: Addario-Berry, Louigi, et al.
Published: (2024)
by: Addario-Berry, Louigi, et al.
Published: (2024)
The Behavior of Tree-Width and Path-Width under Graph Operations and Graph Transformations
by: Gurski, Frank, et al.
Published: (2024)
by: Gurski, Frank, et al.
Published: (2024)
Untangling Graphs on Surfaces
by: de Verdière, Éric Colin, et al.
Published: (2023)
by: de Verdière, Éric Colin, et al.
Published: (2023)
Naively Sorting Evolving Data is Optimal and Robust
by: Giakkoupis, George, et al.
Published: (2024)
by: Giakkoupis, George, et al.
Published: (2024)
Towards a Unified Theory of Time-Varying Data
by: Bumpus, Benjamin Merlin, et al.
Published: (2024)
by: Bumpus, Benjamin Merlin, et al.
Published: (2024)
Towards a format for describing networks / 2. Format elements
by: Batagelj, Vladimir, et al.
Published: (2025)
by: Batagelj, Vladimir, et al.
Published: (2025)
CAFS: A Cache-Aware Frequency Sort for Low-Cardinality Integer Data on x86-64
by: Shlyk, Vasiliy S.
Published: (2026)
by: Shlyk, Vasiliy S.
Published: (2026)
A weighted angle distance on strings
by: Molnar, Grant
Published: (2026)
by: Molnar, Grant
Published: (2026)
The Li-Chao Tree: Algorithm Specification and Analysis
by: Li, Chao
Published: (2026)
by: Li, Chao
Published: (2026)
Complex Diffusion Maps with $ω$-Parameterized Kernels Revealing Inherent Harmonic Representations
by: Dang, Tongzhen, et al.
Published: (2026)
by: Dang, Tongzhen, et al.
Published: (2026)
The Complexity of Resilience for Digraph Queries
by: Bodirsky, Manuel, et al.
Published: (2026)
by: Bodirsky, Manuel, et al.
Published: (2026)
Accelerating Large-Scale Cheminformatics Using a Byte-Offset Indexing Architecture for Terabyte-Scale Data Integration
by: Malikussaid, et al.
Published: (2026)
by: Malikussaid, et al.
Published: (2026)
A scalable clustering algorithm to approximate graph cuts
by: Suchan, Leo, et al.
Published: (2023)
by: Suchan, Leo, et al.
Published: (2023)
SCHENO: Measuring Schema vs. Noise in Graphs
by: Hibshman, Justus Isaiah, et al.
Published: (2024)
by: Hibshman, Justus Isaiah, et al.
Published: (2024)
Experimental algorithms for the dualization problem
by: Mezzini, Mauro, et al.
Published: (2025)
by: Mezzini, Mauro, et al.
Published: (2025)
Equivalences of promise compactness principles
by: Bodor, Bertalan
Published: (2026)
by: Bodor, Bertalan
Published: (2026)
Fast Approximation Algorithms for Euclidean Minimum Weight Perfect Matching
by: Hougardy, Stefan, et al.
Published: (2024)
by: Hougardy, Stefan, et al.
Published: (2024)
Similar Items
-
Residual-Entropy Accounting for Routed Atom-Budgeted Learned Indexes
by: Alpay, Faruk, et al.
Published: (2026) -
Memento Filter: A Fast, Dynamic, and Robust Range Filter
by: Eslami, Navid, et al.
Published: (2024) -
Let them have CAKES: A Cutting-Edge Algorithm for Scalable, Efficient, and Exact Search on Big Data
by: Prior, Morgan E., et al.
Published: (2023) -
Stochastic Indexing Primitives for Non-Deterministic Molecular Archives
by: Alpay, Faruk, et al.
Published: (2026) -
Community-Aware Vertex Ordering for Reference-Based Graph Compression: A Cross-Encoder Empirical Study
by: Dubuisson, Jimmy
Published: (2026)