Cover Image

Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Bhatt, Samir, Sabol, John, Dey, Papri, Penn, Matthew J., Duchene, David, Yoshida, Ruriko
Format:	Preprint
Published:	2025
Subjects:	Populations and Evolution Computation
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Tropical Fermat-Weber Points over Spaces of $M$-Ultrametrics
by: Cox, Shelby, et al.
Published: (2025)

Tropical Logistic Regression Model on Space of Phylogenetic Trees
by: Aliatimis, Georgios, et al.
Published: (2023)

Phylogenetic Tree Inference with Tropical Axial Attention
by: Teska, Chris, et al.
Published: (2026)

Projected Gradient Descent Method for Tropical Principal Component Analysis over Tree Space
by: Yoshida, Ruriko
Published: (2025)

Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees
by: Penn, Matthew J, et al.
Published: (2023)

Generalised Bayesian distance-based phylogenetics for the genomics era
by: Penn, Matthew J., et al.
Published: (2025)

Bandwidth Selection of Density Estimators over Treespaces
by: Yoshida, Ruriko, et al.
Published: (2025)

Phylo2Vec: a vector representation for binary trees
by: Penn, Matthew J, et al.
Published: (2023)

phylo2vec: a library for vector-based phylogenetic tree manipulation
by: Scheidwasser, Neil, et al.
Published: (2025)

Covariance Decomposition for Distance Based Species Tree Estimation
by: Aliatimis, Georgios, et al.
Published: (2025)

The Cognate Data Bottleneck in Language Phylogenetics
by: Häuser, Luise, et al.
Published: (2025)

Ecology, Spatial Structure, and Selection Pressure Induce Strong Signatures in Phylogenetic Structure
by: Moreno, Matthew Andres, et al.
Published: (2024)

PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation
by: Moreno, Matthew Andres, et al.
Published: (2026)

Treemble: A Graphical Tool to Generate Newick Strings from Phylogenetic Tree Images
by: Allard, John B., et al.
Published: (2025)

Order-Dependent Dissimilarity Measures on Phylogenetic Trees
by: Linz, Simone, et al.
Published: (2025)

Estimation of Phylogenetic Tree using Gene Sequencing Data
by: Rafiuddin, S M
Published: (2025)

Group-Based Phylogenetic Models on 3-Sunlet Networks
by: Cox, Shelby, et al.
Published: (2024)

DendroPy 5: a mature Python library for phylogenetic computing
by: Moreno, Matthew Andres, et al.
Published: (2024)

On the Approximation of Phylogenetic Distance Functions by Artificial Neural Networks
by: Rosenzweig, Benjamin K., et al.
Published: (2025)

Modelling the Stochastic Importation Dynamics and Establishment of Novel Pathogenic Strains using a General Branching Processes Framework
by: Curran-Sebastian, Jacob, et al.
Published: (2024)

ARTreeFormer: A Faster Attention-based Autoregressive Model for Phylogenetic Inference
by: Xie, Tianyu, et al.
Published: (2025)

Distinguishing Phylogenetic Level-2 Networks with Quartets and Inter-Taxon Quartet Distances
by: Holtgrefe, Niels, et al.
Published: (2025)

PhyloProfile v2: Scalable Exploration of Multilayered Phylogenetic Profiles via Dimensionality Reduction
by: Tran, Vinh, et al.
Published: (2025)

Bounds on the Treewidth of Level-k Rooted Phylogenetic Networks
by: Markin, Alexey, et al.
Published: (2024)

Phylogenetic least squares estimation without genetic distances
by: Chi, Peter B., et al.
Published: (2023)

Phylogenetic network classes through the lens of expanding covers
by: Francis, Andrew, et al.
Published: (2023)

Torchtree: flexible phylogenetic model development and inference using PyTorch
by: Fourment, Mathieu, et al.
Published: (2024)

Metagenomic Analysis using Phylogenetic Placement -- A Review of the First Decade
by: Czech, Lucas, et al.
Published: (2022)

Multivariate Aspects of Phylogenetic Comparative Methods
by: Bartoszek, Krzysztof
Published: (2024)

Statistics for Phylogenetic Trees in the Presence of Stickiness
by: Lammers, Lars, et al.
Published: (2024)

Generalized Lotka-Volterra systems with quenched random interactions and saturating nonlinear response
by: Zenari, Marco, et al.
Published: (2025)

PhyloGFN: Phylogenetic inference with generative flow networks
by: Zhou, Mingyang, et al.
Published: (2023)

Continuum models describing probabilistic motion of tagged agents in exclusion processes
by: Plank, Michael J., et al.
Published: (2025)

A High-Order Cumulant Extension of Quasi-Linkage Equilibrium
by: Shimagaki, Kai S., et al.
Published: (2025)

Unsupervised Learning of Phylogenetic Trees via Split-Weight Embedding
by: Kong, Yibo, et al.
Published: (2023)

Inferring Phylogenetic Networks from Required and Forbidden LCA-Constraints
by: Ebert, Patricia A., et al.
Published: (2026)

Evaluating Phylogenetic Comparative Methods under Reticulate Evolutionary Scenarios
by: Morley, Lydia, et al.
Published: (2026)

PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders
by: Xie, Tianyu, et al.
Published: (2025)

WebCVTree4: A Newly Designed Phylogenetic and Taxonomic Study Platform for Prokaryotes Using Composition Vectors and Whole Genomes
by: Zuo, Guanghong
Published: (2026)

Phylogenetic network models as graphical models
by: Sullivant, Seth
Published: (2025)