SeedFold: Scaling Biomolecular Structure Prediction
Fuente:
arXiv
Saved in:
| Main Authors: | Zhou, Yi, Lu, Chan, Ma, Yiming, Qu, Wei, Ye, Fei, Zhang, Kexin, Wang, Lan, Gui, Minrui, Gu, Quanquan |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
SeedProteo: Accurate De Novo All-Atom Design of Protein Binders
by: Qu, Wei, et al.
Published: (2025)
by: Qu, Wei, et al.
Published: (2025)
Reshaping Biomolecular Structure Prediction through Strategic Conformational Exploration with HelixFold-S1
by: Liu, Lihang, et al.
Published: (2025)
by: Liu, Lihang, et al.
Published: (2025)
IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction
by: The IntFold Team, et al.
Published: (2025)
by: The IntFold Team, et al.
Published: (2025)
ProteinWeaver: A Divide-and-Assembly Approach for Protein Backbone Design
by: Ma, Yiming, et al.
Published: (2024)
by: Ma, Yiming, et al.
Published: (2024)
Technical Report of HelixFold3 for Biomolecular Structure Prediction
by: Liu, Lihang, et al.
Published: (2024)
by: Liu, Lihang, et al.
Published: (2024)
CONFIDE: Hallucination Assessment for Reliable Biomolecular Structure Prediction and Design
by: Gao, Zijun, et al.
Published: (2025)
by: Gao, Zijun, et al.
Published: (2025)
Demystifying Multimodal Biomolecular Co-design With Intrinsic Geodesic Coupling
by: Qiu, Keyue, et al.
Published: (2026)
by: Qiu, Keyue, et al.
Published: (2026)
DL4Proteins Jupyter Notebooks Teach how to use Artificial Intelligence for Biomolecular Structure Prediction and Design
by: Chungyoun, Michael, et al.
Published: (2025)
by: Chungyoun, Michael, et al.
Published: (2025)
Decomposed Direct Preference Optimization for Structure-Based Drug Design
by: Cheng, Xiwei, et al.
Published: (2024)
by: Cheng, Xiwei, et al.
Published: (2024)
Diffusion Language Models Are Versatile Protein Learners
by: Wang, Xinyou, et al.
Published: (2024)
by: Wang, Xinyou, et al.
Published: (2024)
Electrostatics of Salt-Dependent Reentrant Phase Behaviors Highlights Diverse Roles of ATP in Biomolecular Condensates
by: Lin, Yi-Hsuan, et al.
Published: (2024)
by: Lin, Yi-Hsuan, et al.
Published: (2024)
SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction
by: Huang, Yanwen, et al.
Published: (2024)
by: Huang, Yanwen, et al.
Published: (2024)
ODesign: A World Model for Biomolecular Interaction Design
by: Zhang, Odin, et al.
Published: (2025)
by: Zhang, Odin, et al.
Published: (2025)
DecompOpt: Controllable and Decomposed Diffusion Models for Structure-based Molecular Optimization
by: Zhou, Xiangxin, et al.
Published: (2024)
by: Zhou, Xiangxin, et al.
Published: (2024)
Quantifying the Role of OpenFold Components in Protein Structure Prediction
by: Hayes, Tyler L., et al.
Published: (2025)
by: Hayes, Tyler L., et al.
Published: (2025)
HelixFold-Multimer: Elevating Protein Complex Structure Prediction to New Heights
by: Fang, Xiaomin, et al.
Published: (2024)
by: Fang, Xiaomin, et al.
Published: (2024)
Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2
by: Xing, Enming, et al.
Published: (2025)
by: Xing, Enming, et al.
Published: (2025)
DecompDiff: Diffusion Models with Decomposed Priors for Structure-Based Drug Design
by: Guan, Jiaqi, et al.
Published: (2024)
by: Guan, Jiaqi, et al.
Published: (2024)
Lifting Biomolecular Data Acquisition
by: Weinstein, Eli N., et al.
Published: (2025)
by: Weinstein, Eli N., et al.
Published: (2025)
Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling
by: Zhou, Xiangxin, et al.
Published: (2025)
by: Zhou, Xiangxin, et al.
Published: (2025)
ZeroFold: Protein-RNA Binding Affinity Predictions from Pre-Structural Embeddings
by: Hanke, Josef, et al.
Published: (2026)
by: Hanke, Josef, et al.
Published: (2026)
NeuralPLexer3: Accurate Biomolecular Complex Structure Prediction with Flow Models
by: Qiao, Zhuoran, et al.
Published: (2024)
by: Qiao, Zhuoran, et al.
Published: (2024)
Protein Inverse Folding From Structure Feedback
by: Xu, Junde, et al.
Published: (2025)
by: Xu, Junde, et al.
Published: (2025)
Fold-CP: A Context Parallelism Framework for Biomolecular Modeling
by: Lin, Dejun, et al.
Published: (2026)
by: Lin, Dejun, et al.
Published: (2026)
Protein Autoregressive Modeling via Multiscale Structure Generation
by: Qu, Yanru, et al.
Published: (2026)
by: Qu, Yanru, et al.
Published: (2026)
Fold-switching Proteins
by: Chakravarty, Devlina, et al.
Published: (2025)
by: Chakravarty, Devlina, et al.
Published: (2025)
Atomic Trajectory Modeling with State Space Models for Biomolecular Dynamics
by: Shi, Liang, et al.
Published: (2026)
by: Shi, Liang, et al.
Published: (2026)
RiboDiffusion: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
by: Huang, Han, et al.
Published: (2024)
by: Huang, Han, et al.
Published: (2024)
From Prediction to Simulation: AlphaFold 3 as a Differentiable Framework for Structural Biology
by: Abbaszadeh, Alireza, et al.
Published: (2025)
by: Abbaszadeh, Alireza, et al.
Published: (2025)
ProteinBench: A Holistic Evaluation of Protein Foundation Models
by: Ye, Fei, et al.
Published: (2024)
by: Ye, Fei, et al.
Published: (2024)
Decoding How Proteins Fold
by: Vila, Jorge
Published: (2025)
by: Vila, Jorge
Published: (2025)
Pushing the boundaries of Structure-Based Drug Design through Collaboration with Large Language Models
by: Gao, Bowen, et al.
Published: (2025)
by: Gao, Bowen, et al.
Published: (2025)
Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization
by: Zhou, Xiangxin, et al.
Published: (2024)
by: Zhou, Xiangxin, et al.
Published: (2024)
SGNet: Folding Symmetrical Protein Complex with Deep Learning
by: Li, Zhaoqun, et al.
Published: (2024)
by: Li, Zhaoqun, et al.
Published: (2024)
Physically Valid Biomolecular Interaction Modeling with Gauss-Seidel Projection
by: Chen, Siyuan, et al.
Published: (2025)
by: Chen, Siyuan, et al.
Published: (2025)
AlphaFold two years on: validation and impact
by: Kovalevskiy, Oleg, et al.
Published: (2024)
by: Kovalevskiy, Oleg, et al.
Published: (2024)
Inverse problems with experiment-guided AlphaFold
by: Maddipatla, Advaith, et al.
Published: (2025)
by: Maddipatla, Advaith, et al.
Published: (2025)
Computational Explorations in Biomedicine: Unraveling Molecular Dynamics for Cancer, Drug Delivery, and Biomolecular Insights using LAMMPS Simulations
by: Bozorgpour, Reza
Published: (2023)
by: Bozorgpour, Reza
Published: (2023)
mRNA Folding Algorithms for Structure and Codon Optimization
by: Ward, Max, et al.
Published: (2025)
by: Ward, Max, et al.
Published: (2025)
Precision Design of Cyclic Peptides using AlphaFold
by: Au, Cheuk Sau
Published: (2025)
by: Au, Cheuk Sau
Published: (2025)
Similar Items
-
SeedProteo: Accurate De Novo All-Atom Design of Protein Binders
by: Qu, Wei, et al.
Published: (2025) -
Reshaping Biomolecular Structure Prediction through Strategic Conformational Exploration with HelixFold-S1
by: Liu, Lihang, et al.
Published: (2025) -
IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction
by: The IntFold Team, et al.
Published: (2025) -
ProteinWeaver: A Divide-and-Assembly Approach for Protein Backbone Design
by: Ma, Yiming, et al.
Published: (2024) -
Technical Report of HelixFold3 for Biomolecular Structure Prediction
by: Liu, Lihang, et al.
Published: (2024)