Cover Image

Allostery Beyond Amplification: Temporal Regulation of Signaling Information

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Pessoa, Pedro, Pressé, Steve, Ozkan, S. Banu
Format:	Preprint
Published:	2026
Subjects:	Molecular Networks Dynamical Systems Biological Physics Chemical Physics
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Homeostasis in Networks with Multiple Input Nodes and Robustness in Bacterial Chemotaxis
by: Madeira, João Luiz de Oliveira, et al.
Published: (2020)

Waveform distortion for temperature compensation and synchronization in circadian rhythms: An approach based on the renormalization group method
by: Gibo, Shingo, et al.
Published: (2024)

The Influence of Canalization on the Robustness of Boolean Networks
by: Kadelka, Claus, et al.
Published: (2016)

Transitions and Thermodynamics on Species Graphs of Chemical Reaction Networks
by: Sugie, Keisuke, et al.
Published: (2024)

First-Passage Time Fluctuation Theorem and Thermodynamic Bound in Cooperative Biomolecular Networks
by: Piephoff, D. Evan, et al.
Published: (2025)

Information geometry of perturbed gradient flow systems on hypergraphs: A perspective towards nonequilibrium physics
by: Loutchko, Dimitri, et al.
Published: (2025)

Relaxation to statistical equilibrium in stochastic Michaelis-Menten kinetics
by: Pal, Subham, et al.
Published: (2021)

Stochastic Thermodynamics of Cooperative Biomolecular Machines: Fluctuation Relations and Hidden Detailed Balance Breaking
by: Piephoff, D. Evan, et al.
Published: (2025)

Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation
by: Akef, Hamidreza, et al.
Published: (2026)

Chaotic Kramers' Law: Hasselmann's Program and AMOC Tipping
by: Deser, Jakob, et al.
Published: (2025)

Epigenetic feedback reshapes dynamical landscapes in gene regulatory networks
by: Hauck, Sascha H., et al.
Published: (2025)

Specific versus Nonspecific Solvent Interactions of a Biomolecule in Water
by: He, Lanhai, et al.
Published: (2022)

Imaging and controlling electron motion and chemical structural dynamics of biological system in real time and space
by: Zhao, Ligong, et al.
Published: (2025)

Surmounting potential barriers: hydrodynamic memory hedges against thermal fluctuations in particle transport
by: Seyler, Sean, et al.
Published: (2020)

Temperature Compensation through Kinetic Regulation in Biochemical Oscillators
by: Fu, Haochen, et al.
Published: (2024)

A Quantitative Analysis of Dynamic Mechanisms Regulating HIV Latency and Activation
by: Xiong, Ruiqi, et al.
Published: (2022)

Finding Thermodynamically Favorable Pathways in Chemical Reaction Networks Using Flows in Hypergraphs and Mixed-Integer Linear Programming
by: Pal, Adittya, et al.
Published: (2024)

Revisiting the scale dependence of the Reynolds number in correlated fluctuating fluids
by: Huang, Sijie, et al.
Published: (2026)

Classifying Hotspots Mutations for Biosimulation with Quantum Neural Networks and Variational Quantum Eigensolver
by: Roosan, Don, et al.
Published: (2025)

Rule-Based Gillespie Simulation of Chemical Systems
by: Machado, Erika M. Herrera, et al.
Published: (2025)

Probabilistic and Maximum Entropy Modeling of Chemical Reaction Systems: Characteristics and Comparisons to Mass Action Kinetic Models
by: Cannon, William R., et al.
Published: (2023)

Absorption spectra of the purple nonsulfur bacteria light-harvesting complex: a DFT study of the B800 part
by: Begunovich, L. V., et al.
Published: (2023)

Symmetries of Living Systems: Symmetry Fibrations and Synchronization in Biological Networks
by: Makse, Hernan A., et al.
Published: (2025)

Exploring the Interplay of Intrinsic Fluctuation and Complexity in Intracellular Calcium Dynamics
by: Chanu, Athokpam Langlen, et al.
Published: (2024)

Information Transmission via Molecular Communication in Astrobiological Environments
by: Lingam, Manasvi
Published: (2023)

Avoiding matrix exponentials for large transition rate matrices
by: Pessoa, Pedro, et al.
Published: (2023)

Tensor hypercontraction for fully self-consistent imaginary-time GF2 and GWSOX methods: theory, implementation, and role of the Green's function second-order exchange for intermolecular interactions
by: Pokhilko, Pavel, et al.
Published: (2024)

Extending the atomic decomposition and many-body representation, a chemistry-motivated monomer-centered approach for machine learning potentials
by: Yu, Qi, et al.
Published: (2024)

Kramers rate for Brownian particles in excitable media with deformable double-well substrates
by: Dikande, Alain M.
Published: (2025)

Irreversibility in Bacterial Regulatory Networks
by: Zhao, Yi, et al.
Published: (2024)

Logistic Gene Regulatory Networks: Prevention of Expression Shutdown, and Numerical Stability Beyond Hill Function
by: Belgacem, Ismail
Published: (2026)

Restoring information in aged gene regulatory networks by single knock-ins
by: LeFebre, Ryan, et al.
Published: (2026)

You ain't seen nothing, and yet: Future biochemical concentrations can be predicted with surprisingly high accuracy
by: Danelia, Ketevan, et al.
Published: (2026)

Noise-Driven Differentiation via Gene Frustration and Epigenetic Fixation
by: Plugers, Davey, et al.
Published: (2026)

Quantifying cellular autonomy in multi-cue environments
by: Gonzalez, Louis, et al.
Published: (2024)

Flexibility in noisy cell-to-cell information dynamics
by: Qunbar, Ismail, et al.
Published: (2024)

Synthetic frequency-controlled gene circuits unlock expanded cellular states
by: Zhang, Rongrong, et al.
Published: (2024)

Landscapes and nonequilibrium fluctuations of eukaryotic gene regulation
by: Sasai, Masaki, et al.
Published: (2025)

When many noisy genes optimize information flow
by: Lawson, Nicholas, et al.
Published: (2025)

Finding the last bits of positional information
by: McGough, Lauren, et al.
Published: (2023)