Microscopy system for in situ sea ice structure and biology observations
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| Format: | Preprint |
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2026
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| author | Lessard-Hamel, Béatrice Babin, Marcel Thibault, Simon |
| author_facet | Lessard-Hamel, Béatrice Babin, Marcel Thibault, Simon |
| contents | Sea ice harbours a rich community of well-adapted microorganisms that inhabit liquid micro-spaces where extreme conditions prevail. Currently at risk under climate change, the sea-ice microbiome holds mysteries about evolution of life on Earth and possibly elsewhere, which require methodological innovation to be unravelled. Gaining microscopic insight into the internal structure and biology of sea ice has traditionally been limited to destructive and extrusive ice core sampling methods. Here we present an in situ microscopic imaging system to observe undisturbed living microorganisms directly within sea the ice matrix. The complex and heterogeneous nature of sea ice, including its water crystal lattice, brine channels, air bubbles, and various impurities, presents engineering challenges for the development of this imaging system. Despite the fragile nature of the sea-ice matrix, we could successfully deploy, test and use the new in situ microscope during a recent expedition on the icepack in Arctic. We collected numerous images of live and intact single-celled and colony-forming diatoms, and documented for the first time at such a high resolution some microphysical features of sea ice. The hardware and software design of the endoscope is presented along with acquisition results of the microstructure and diatom images. These findings collectively demonstrate the potential for this new in situ microscopic imaging system to transform the way we study sea ice and to allow a deeper understanding of its complex microstructure and living microorganisms. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2601_02328 |
| institution | arXiv |
| publishDate | 2026 |
| record_format | arxiv |
| spellingShingle | Microscopy system for in situ sea ice structure and biology observations Lessard-Hamel, Béatrice Babin, Marcel Thibault, Simon Atmospheric and Oceanic Physics Optics Sea ice harbours a rich community of well-adapted microorganisms that inhabit liquid micro-spaces where extreme conditions prevail. Currently at risk under climate change, the sea-ice microbiome holds mysteries about evolution of life on Earth and possibly elsewhere, which require methodological innovation to be unravelled. Gaining microscopic insight into the internal structure and biology of sea ice has traditionally been limited to destructive and extrusive ice core sampling methods. Here we present an in situ microscopic imaging system to observe undisturbed living microorganisms directly within sea the ice matrix. The complex and heterogeneous nature of sea ice, including its water crystal lattice, brine channels, air bubbles, and various impurities, presents engineering challenges for the development of this imaging system. Despite the fragile nature of the sea-ice matrix, we could successfully deploy, test and use the new in situ microscope during a recent expedition on the icepack in Arctic. We collected numerous images of live and intact single-celled and colony-forming diatoms, and documented for the first time at such a high resolution some microphysical features of sea ice. The hardware and software design of the endoscope is presented along with acquisition results of the microstructure and diatom images. These findings collectively demonstrate the potential for this new in situ microscopic imaging system to transform the way we study sea ice and to allow a deeper understanding of its complex microstructure and living microorganisms. |
| title | Microscopy system for in situ sea ice structure and biology observations |
| topic | Atmospheric and Oceanic Physics Optics |
| url | https://arxiv.org/abs/2601.02328 |