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Autores principales: Pan, Mianzhi, Li, JianFei, Liu, Peishuo, Wang, Botian, Ouyang, Yawen, Rong, Yiming, Zhou, Hao, Zhang, Jianbing
Formato: Preprint
Publicado: 2026
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Acceso en línea:https://arxiv.org/abs/2601.09285
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author Pan, Mianzhi
Li, JianFei
Liu, Peishuo
Wang, Botian
Ouyang, Yawen
Rong, Yiming
Zhou, Hao
Zhang, Jianbing
author_facet Pan, Mianzhi
Li, JianFei
Liu, Peishuo
Wang, Botian
Ouyang, Yawen
Rong, Yiming
Zhou, Hao
Zhang, Jianbing
contents Metal-organic frameworks (MOFs) are porous crystalline materials with broad applications such as carbon capture and drug delivery, yet accurately predicting their 3D structures remains a significant challenge. While Large Language Models (LLMs) have shown promise in generating crystals, their application to MOFs is hindered by MOFs' high atomic complexity. Inspired by the success of block-wise paradigms in deep generative models, we pioneer the use of LLMs in this domain by introducing MOF-LLM, the first LLM framework specifically adapted for block-level MOF structure prediction. To effectively harness LLMs for this modular assembly task, our training paradigm integrates spatial-aware continual pre-training (CPT), structural supervised fine-tuning (SFT), and matching-driven reinforcement learning (RL). By incorporating explicit spatial priors and optimizing structural stability via Soft Adaptive Policy Optimization (SAPO), our approach substantially enhances the spatial reasoning capability of a Qwen-3 8B model for accurate MOF structure prediction. Comprehensive experiments demonstrate that MOF-LLM outperforms state-of-the-art denoising-based and LLM-based methods while exhibiting superior sampling efficiency.
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publishDate 2026
record_format arxiv
spellingShingle Enhancing Spatial Reasoning in Large Language Models for Metal-Organic Frameworks Structure Prediction
Pan, Mianzhi
Li, JianFei
Liu, Peishuo
Wang, Botian
Ouyang, Yawen
Rong, Yiming
Zhou, Hao
Zhang, Jianbing
Machine Learning
Materials Science
Metal-organic frameworks (MOFs) are porous crystalline materials with broad applications such as carbon capture and drug delivery, yet accurately predicting their 3D structures remains a significant challenge. While Large Language Models (LLMs) have shown promise in generating crystals, their application to MOFs is hindered by MOFs' high atomic complexity. Inspired by the success of block-wise paradigms in deep generative models, we pioneer the use of LLMs in this domain by introducing MOF-LLM, the first LLM framework specifically adapted for block-level MOF structure prediction. To effectively harness LLMs for this modular assembly task, our training paradigm integrates spatial-aware continual pre-training (CPT), structural supervised fine-tuning (SFT), and matching-driven reinforcement learning (RL). By incorporating explicit spatial priors and optimizing structural stability via Soft Adaptive Policy Optimization (SAPO), our approach substantially enhances the spatial reasoning capability of a Qwen-3 8B model for accurate MOF structure prediction. Comprehensive experiments demonstrate that MOF-LLM outperforms state-of-the-art denoising-based and LLM-based methods while exhibiting superior sampling efficiency.
title Enhancing Spatial Reasoning in Large Language Models for Metal-Organic Frameworks Structure Prediction
topic Machine Learning
Materials Science
url https://arxiv.org/abs/2601.09285