Multimodal Spatial Omics: From Data Acquisition to Computational Integration
Fuente:
arXiv
Saved in:
| Main Authors: | Isik, Esra Busra, Usta, Yusuf Hakan, Liu, Haozhe, Riazi, Maryam, Roach, William, Zhou, Hongpeng, Rattray, Magnus, Georgaka, Sokratia |
|---|---|
| Format: | Preprint |
| Published: |
2026
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
High nucleotide skew palindromic DNA sequences function as replication origins due to their unzipping propensity
by: Sahu, Parthasarathi, et al.
Published: (2024)
by: Sahu, Parthasarathi, et al.
Published: (2024)
Towards Parsimonious Generative Modeling of RNA Families
by: Calvanese, Francesco, et al.
Published: (2023)
by: Calvanese, Francesco, et al.
Published: (2023)
MicroFuse: Protein-to-Genome Expert Fusion for Microbial Operon Reasoning
by: Cho, Seungik
Published: (2026)
by: Cho, Seungik
Published: (2026)
Fast and Functional Structured Data Generators Rooted in Out-of-Equilibrium Physics
by: Carbone, Alessandra, et al.
Published: (2023)
by: Carbone, Alessandra, et al.
Published: (2023)
Harnessing the Potential of Spatial Statistics for Spatial Omics Data with pasta
by: Emons, Martin, et al.
Published: (2024)
by: Emons, Martin, et al.
Published: (2024)
DNA energy constraints shape biological evolutionary trajectories
by: Fariselli, Piero, et al.
Published: (2019)
by: Fariselli, Piero, et al.
Published: (2019)
A versatile informative diffusion model for single-cell ATAC-seq data generation and analysis
by: Huang, Lei, et al.
Published: (2024)
by: Huang, Lei, et al.
Published: (2024)
Pseudo-perplexity in One Fell Swoop for Protein Fitness Estimation
by: Kantroo, Pranav, et al.
Published: (2024)
by: Kantroo, Pranav, et al.
Published: (2024)
Refining Platelet Purification Methods: Enhancing Proteomics for Clinical Applications
by: Markhus, Vibecke, et al.
Published: (2025)
by: Markhus, Vibecke, et al.
Published: (2025)
PASS: De novo assembler for short peptide sequences
by: Warren, René L.
Published: (2022)
by: Warren, René L.
Published: (2022)
Pan-genome Analysis of Angiosperm Plastomes using PGR-TK
by: Samanta, Manoj P.
Published: (2025)
by: Samanta, Manoj P.
Published: (2025)
Network Pharmacology Framework Characterizes Polypharmacological Properties of Dietary Flavonoids: Integration of Computational, Experimental, and Epidemiological Evidence
by: Fujisaki, Koyo, et al.
Published: (2026)
by: Fujisaki, Koyo, et al.
Published: (2026)
Integrate Any Omics: Towards genome-wide data integration for patient stratification
by: Ma, Shihao, et al.
Published: (2024)
by: Ma, Shihao, et al.
Published: (2024)
Static Three-Dimensional Structures Determine Fast Dynamics Between Distal Loci Pairs in Interphase Chromosomes
by: Shi, Guang, et al.
Published: (2025)
by: Shi, Guang, et al.
Published: (2025)
In vitro binding energies capture Klf4 occupancy across the human genome
by: Schwager, Anne, et al.
Published: (2026)
by: Schwager, Anne, et al.
Published: (2026)
RNA-FrameFlow: Flow Matching for de novo 3D RNA Backbone Design
by: Anand, Rishabh, et al.
Published: (2024)
by: Anand, Rishabh, et al.
Published: (2024)
The optimization of crop response to climatic stress through modulation of plant stress response mechanisms. Opportunities for biostimulants and plant hormones to meet climate challenges
by: Li, Jing, et al.
Published: (2025)
by: Li, Jing, et al.
Published: (2025)
SAE-RNA: A Sparse Autoencoder Model for Interpreting RNA Language Model Representations
by: Kim, Taehan, et al.
Published: (2025)
by: Kim, Taehan, et al.
Published: (2025)
AntiFold: Improved antibody structure-based design using inverse folding
by: Høie, Magnus Haraldson, et al.
Published: (2024)
by: Høie, Magnus Haraldson, et al.
Published: (2024)
Two for the Price of One: Integrating Large Language Models to Learn Biophysical Interactions
by: Clark, Joseph D., et al.
Published: (2025)
by: Clark, Joseph D., et al.
Published: (2025)
Trajectory Inference for Single Cell Omics
by: Hutton, Alexandre, et al.
Published: (2025)
by: Hutton, Alexandre, et al.
Published: (2025)
StateXDiff: Cell State-Contextualized Multimodal Diffusion for Single-Cell Perturbation Prediction
by: Shi, Peiting, et al.
Published: (2026)
by: Shi, Peiting, et al.
Published: (2026)
Missing-Modality-Aware Graph Neural Network for Cancer Classification
by: Tabakhi, Sina, et al.
Published: (2025)
by: Tabakhi, Sina, et al.
Published: (2025)
On-Chip and Off-Chip TIA Amplifiers for Nanopore Signal Readout Design, Performance and Challenges: A Review
by: Deepthi, K. Ashoka, et al.
Published: (2025)
by: Deepthi, K. Ashoka, et al.
Published: (2025)
Foundation Models for AI-Enabled Biological Design
by: Moldwin, Asher, et al.
Published: (2025)
by: Moldwin, Asher, et al.
Published: (2025)
Heterogeneous graph attention network improves cancer multiomics integration
by: Tabakhi, Sina, et al.
Published: (2024)
by: Tabakhi, Sina, et al.
Published: (2024)
Protein folding classes -- High-dimensional geometry of amino acid composition space revisited
by: Mao, Boryeu
Published: (2025)
by: Mao, Boryeu
Published: (2025)
GoForth: Language Models for RNA Design under Structure, Sequence, and Coding Constraints
by: Lindsey, Michael
Published: (2026)
by: Lindsey, Michael
Published: (2026)
Explainable Machine Learning and Deep Learning Models for Predicting TAS2R-Bitter Molecule Interactions
by: Ferri, Francesco, et al.
Published: (2024)
by: Ferri, Francesco, et al.
Published: (2024)
Benchmarking structure-based three-dimensional molecular generative models using GenBench3D: ligand conformation quality matters
by: Baillif, Benoit, et al.
Published: (2024)
by: Baillif, Benoit, et al.
Published: (2024)
Canonicalization of the E value from BLAST similarity search -- dissimilarity measure and distance function for a metric space of protein sequences
by: Mao, Boryeu
Published: (2025)
by: Mao, Boryeu
Published: (2025)
Frequency-Space Mechanics: A Sequence and Coordinate-Free Representation for Protein Function Prediction
by: Reilly, Charles B
Published: (2026)
by: Reilly, Charles B
Published: (2026)
HelixVS: Deep Learning-Enhanced Structure-Based Platform for Screening and Design
by: Zhang, Shanzhuo, et al.
Published: (2025)
by: Zhang, Shanzhuo, et al.
Published: (2025)
EscalNet: Learn isotropic representation space for biomolecular dynamics based on effective energy
by: Zuo, Guanghong
Published: (2025)
by: Zuo, Guanghong
Published: (2025)
Persistent Sheaf Laplacian Analysis of Protein Flexibility
by: Hayes, Nicole, et al.
Published: (2025)
by: Hayes, Nicole, et al.
Published: (2025)
Raman Spectroscopy Reveals Photobiomodulation-Induced α-Helix to β-Sheet Transition in Tubulins: Potential Implications for Alzheimer's and Other Neurodegenerative Diseases
by: Di Gregorio, Elisabetta, et al.
Published: (2023)
by: Di Gregorio, Elisabetta, et al.
Published: (2023)
mRNA Folding Algorithms for Structure and Codon Optimization
by: Ward, Max, et al.
Published: (2025)
by: Ward, Max, et al.
Published: (2025)
Quantifying the uncertainty of molecular dynamics simulations : Good-Turing statistics revisited
by: Tsampazi, Vasiliki, et al.
Published: (2026)
by: Tsampazi, Vasiliki, et al.
Published: (2026)
Predicting Protein-Nucleic Acid Flexibility Using Persistent Sheaf Laplacians
by: Hayes, Nicole, et al.
Published: (2025)
by: Hayes, Nicole, et al.
Published: (2025)
Quantification of protein homodimer affinity using native mass spectrometry
by: Schulte, Jonathan, et al.
Published: (2025)
by: Schulte, Jonathan, et al.
Published: (2025)
Similar Items
-
High nucleotide skew palindromic DNA sequences function as replication origins due to their unzipping propensity
by: Sahu, Parthasarathi, et al.
Published: (2024) -
Towards Parsimonious Generative Modeling of RNA Families
by: Calvanese, Francesco, et al.
Published: (2023) -
MicroFuse: Protein-to-Genome Expert Fusion for Microbial Operon Reasoning
by: Cho, Seungik
Published: (2026) -
Fast and Functional Structured Data Generators Rooted in Out-of-Equilibrium Physics
by: Carbone, Alessandra, et al.
Published: (2023) -
Harnessing the Potential of Spatial Statistics for Spatial Omics Data with pasta
by: Emons, Martin, et al.
Published: (2024)