A tropical geometry for bounded biochemical state spaces
Fuente:
arXiv
Saved in:
| Main Author: | Cobley, James N. |
|---|---|
| Format: | Preprint |
| Published: |
2026
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Oxi-Shapes: Tropical geometric analysis of bounded redox proteomic state spaces
by: Cobley, James N.
Published: (2026)
by: Cobley, James N.
Published: (2026)
Accounting for the geometry of the respiratory tract in viral infections
by: Williams, Thomas, et al.
Published: (2024)
by: Williams, Thomas, et al.
Published: (2024)
Using timescale as a state coordinate reveals the metastable geometry of behavior
by: Kaur, Rajpreet, et al.
Published: (2026)
by: Kaur, Rajpreet, et al.
Published: (2026)
Characterizing the non-monotonic behavior of mutual information along biochemical reaction cascades
by: Fan, Raymond, et al.
Published: (2023)
by: Fan, Raymond, et al.
Published: (2023)
Protein folding classes -- High-dimensional geometry of amino acid composition space revisited
by: Mao, Boryeu
Published: (2025)
by: Mao, Boryeu
Published: (2025)
Physics-Informed Neural Networks can accurately model cardiac electrophysiology in 3D geometries and fibrillatory conditions
by: Chiu, Ching-En, et al.
Published: (2024)
by: Chiu, Ching-En, et al.
Published: (2024)
PhoTorch: A robust and generalized biochemical photosynthesis model fitting package based on PyTorch
by: Lei, Tong, et al.
Published: (2025)
by: Lei, Tong, et al.
Published: (2025)
Riemannian L-systems: Modeling growing forms in curved spaces
by: Godin, Christophe, et al.
Published: (2024)
by: Godin, Christophe, et al.
Published: (2024)
Spatially-Structured Models of Viral Dynamics: A Scoping Review
by: Williams, Thomas, et al.
Published: (2025)
by: Williams, Thomas, et al.
Published: (2025)
From seasons to decades: Solar radiation, cloud cover, and CO$_2$ shape young leaf phenology in a tropical forest over 26 years
by: Lüthy, Laura, et al.
Published: (2025)
by: Lüthy, Laura, et al.
Published: (2025)
Exploration of methods for computing sensitivities in ODE models at dynamic and steady states
by: Lakrisenko, Polina, et al.
Published: (2024)
by: Lakrisenko, Polina, et al.
Published: (2024)
The effect of local ventilation on a spatiotemporal model of airborne disease transmission in indoor spaces
by: Pretty, Alexander, et al.
Published: (2023)
by: Pretty, Alexander, et al.
Published: (2023)
EMERALD-UI: An interactive web application to unveil novel protein biology hidden in the suboptimal-alignment space
by: Preoteasa, Andrei, et al.
Published: (2026)
by: Preoteasa, Andrei, et al.
Published: (2026)
A Ca$^{2+}$ puff model based on integrodifferential equations
by: Hawker, Molly, et al.
Published: (2024)
by: Hawker, Molly, et al.
Published: (2024)
A geometry-dependent, force balance-driven model of Staphylococcus epidermidis biofilm cell cluster detachment
by: Xu, Yuehui, et al.
Published: (2026)
by: Xu, Yuehui, et al.
Published: (2026)
Learning dynamical systems with biochemically informed neural ordinary differential equations
by: Fonseca, Luis L., et al.
Published: (2026)
by: Fonseca, Luis L., et al.
Published: (2026)
The cell as a token: high-dimensional geometry in language models and cell embeddings
by: Gilpin, William
Published: (2025)
by: Gilpin, William
Published: (2025)
Electro-diffusive modeling and the role of spine geometry on action potential propagation in neurons
by: Gulati, Rahul, et al.
Published: (2024)
by: Gulati, Rahul, et al.
Published: (2024)
Tube into pearls: A membrane-driven pearling instability shapes platelet biogenesis
by: Léon, C., et al.
Published: (2025)
by: Léon, C., et al.
Published: (2025)
A model of tuberculosis progression using CompuCell3D
by: Doran, James W. G., et al.
Published: (2026)
by: Doran, James W. G., et al.
Published: (2026)
Look mom, no experimental data! Learning to score protein-ligand interactions from simulations
by: Brocidiacono, Michael, et al.
Published: (2025)
by: Brocidiacono, Michael, et al.
Published: (2025)
A first passage model of intravitreal drug delivery and residence time, in relation to ocular geometry, individual variability, and injection location
by: Lamirande, Patricia, et al.
Published: (2024)
by: Lamirande, Patricia, et al.
Published: (2024)
EscalNet: Learn isotropic representation space for biomolecular dynamics based on effective energy
by: Zuo, Guanghong
Published: (2025)
by: Zuo, Guanghong
Published: (2025)
MorphoITH: A Framework for Deconvolving Intra-Tumor Heterogeneity Using Tissue Morphology
by: Nielsen, Aleksandra Weronika, et al.
Published: (2025)
by: Nielsen, Aleksandra Weronika, et al.
Published: (2025)
Universal bounds on entropy production from fluctuating coarse-grained trajectories
by: Seifert, Udo
Published: (2025)
by: Seifert, Udo
Published: (2025)
Uncertainty and sensitivity analysis of hair growth duration in human scalp follicles under normal and alopecic conditions
by: Dobreva, Atanaska, et al.
Published: (2025)
by: Dobreva, Atanaska, et al.
Published: (2025)
Image-Based Biospeckle Contrast Analysis for Rapid Antimicrobial Susceptibility Testing
by: Gameiro, M. A., et al.
Published: (2025)
by: Gameiro, M. A., et al.
Published: (2025)
Disentangling Proxies of Demographic Adjustments in Clinical Equations
by: Shah, Aashna P., et al.
Published: (2025)
by: Shah, Aashna P., et al.
Published: (2025)
Unlocking tropical forest complexity: How tree assemblages in secondary forests boost biodiversity conservation
by: Oliveira, Maïri Souza, et al.
Published: (2025)
by: Oliveira, Maïri Souza, et al.
Published: (2025)
Topological Data Analysis for Unsupervised Feature Selection in Large Scale Spatial Omics Data Sets
by: Boyle, James, et al.
Published: (2025)
by: Boyle, James, et al.
Published: (2025)
Advancing Drug Development Through Strategic Cell Line and Compound Selection Using Drug Response Profiles
by: Abdel-Rehim, Abbi, et al.
Published: (2025)
by: Abdel-Rehim, Abbi, et al.
Published: (2025)
Multimodal Modeling of Ultradian Rhythms Using the Hankel Alternative View of Koopman (HAVOK) Analysis
by: Molefi, Emmanuel, et al.
Published: (2025)
by: Molefi, Emmanuel, et al.
Published: (2025)
A mathematical language for linking fine-scale structure in spikes from hundreds to thousands of neurons with behaviour
by: Busch, Alexandra N., et al.
Published: (2024)
by: Busch, Alexandra N., et al.
Published: (2024)
Canonicalization of the E value from BLAST similarity search -- dissimilarity measure and distance function for a metric space of protein sequences
by: Mao, Boryeu
Published: (2025)
by: Mao, Boryeu
Published: (2025)
Label-free pathological subtyping of non-small cell lung cancer using deep classification and virtual immunohistochemical staining
by: Zang, Zhenya, et al.
Published: (2025)
by: Zang, Zhenya, et al.
Published: (2025)
Multimodal Alignment Improves Generalizability of Genomic Biomarker Prediction in Computational Pathology
by: Redekop, Ekaterina, et al.
Published: (2026)
by: Redekop, Ekaterina, et al.
Published: (2026)
Individualized prescriptive inference in ischaemic stroke
by: Giles, Dominic, et al.
Published: (2023)
by: Giles, Dominic, et al.
Published: (2023)
Viral Dark Matter: Illuminating Protein Function, Ecology, and Biotechnological Promises
by: Kosmopoulos, James C., et al.
Published: (2025)
by: Kosmopoulos, James C., et al.
Published: (2025)
Microbial and Viral Ecology Analysis for Metagenomic Data
by: Kosmopoulos, James C., et al.
Published: (2024)
by: Kosmopoulos, James C., et al.
Published: (2024)
Spatial Analysis of Neuromuscular Junctions Activation in Three-Dimensional Histology-based Muscle Reconstructions
by: Orsini, Alessandro Ascani, et al.
Published: (2025)
by: Orsini, Alessandro Ascani, et al.
Published: (2025)
Similar Items
-
Oxi-Shapes: Tropical geometric analysis of bounded redox proteomic state spaces
by: Cobley, James N.
Published: (2026) -
Accounting for the geometry of the respiratory tract in viral infections
by: Williams, Thomas, et al.
Published: (2024) -
Using timescale as a state coordinate reveals the metastable geometry of behavior
by: Kaur, Rajpreet, et al.
Published: (2026) -
Characterizing the non-monotonic behavior of mutual information along biochemical reaction cascades
by: Fan, Raymond, et al.
Published: (2023) -
Protein folding classes -- High-dimensional geometry of amino acid composition space revisited
by: Mao, Boryeu
Published: (2025)