Atomic Depth Estimation From Noisy Electron Microscopy Data Via Deep Learning

Fuente: arXiv
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Autori principali: Leibovich, Matan, Tan, Mai, Manzorro, Ramon, Marcos-Morales, Adria, Mohan, Sreyas, Crozier, Peter A., Fernandez-Granda, Carlos
Natura: Preprint
Pubblicazione: 2026
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author Leibovich, Matan
Tan, Mai
Manzorro, Ramon
Marcos-Morales, Adria
Mohan, Sreyas
Crozier, Peter A.
Fernandez-Granda, Carlos
author_facet Leibovich, Matan
Tan, Mai
Manzorro, Ramon
Marcos-Morales, Adria
Mohan, Sreyas
Crozier, Peter A.
Fernandez-Granda, Carlos
contents We present a novel approach for extracting 3D atomic-level information from transmission electron microscopy (TEM) images affected by significant noise. The approach is based on formulating depth estimation as a semantic segmentation problem. We address the resulting segmentation problem by training a deep convolutional neural network to generate pixel-wise depth segmentation maps using simulated data corrupted by synthetic noise. The proposed method was applied to estimate the depth of atomic columns in CeO2 nanoparticles from simulated images and real-world TEM data. Our experiments show that the resulting depth estimates are accurate, calibrated and robust to noise.
format Preprint
id arxiv_https___arxiv_org_abs_2601_17046
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Atomic Depth Estimation From Noisy Electron Microscopy Data Via Deep Learning
Leibovich, Matan
Tan, Mai
Manzorro, Ramon
Marcos-Morales, Adria
Mohan, Sreyas
Crozier, Peter A.
Fernandez-Granda, Carlos
Computer Vision and Pattern Recognition
Machine Learning
We present a novel approach for extracting 3D atomic-level information from transmission electron microscopy (TEM) images affected by significant noise. The approach is based on formulating depth estimation as a semantic segmentation problem. We address the resulting segmentation problem by training a deep convolutional neural network to generate pixel-wise depth segmentation maps using simulated data corrupted by synthetic noise. The proposed method was applied to estimate the depth of atomic columns in CeO2 nanoparticles from simulated images and real-world TEM data. Our experiments show that the resulting depth estimates are accurate, calibrated and robust to noise.
title Atomic Depth Estimation From Noisy Electron Microscopy Data Via Deep Learning
topic Computer Vision and Pattern Recognition
Machine Learning
url https://arxiv.org/abs/2601.17046