Imagen de Portada

FASTR: Reimagining FASTQ via Compact Image-inspired Representation

Fuente: arXiv

Guardado en:

Detalles Bibliográficos
Autores principales:	Tkachenko, Adrian, Salem, Sepehr, Adeniyi, Ayotomiwa Ezekiel, Bingol, Zulal, Uddin, Mohammed Nayeem, Prasanna, Akshat, Zelikovsky, Alexander, Mangul, Serghei, Alkan, Can, Alser, Mohammed
Formato:	Preprint
Publicado:	2026
Materias:	Genomics Machine Learning
Acceso en línea:	Acceder al recurso
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
por: Bingöl, Zülal, et al.
Publicado: (2021)

LCPan: efficient variation graph construction using Locally Consistent Parsing
por: Ashyralyyev, Akmuhammet, et al.
Publicado: (2025)

MetaTrinity: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation
por: Gollwitzer, Arvid E., et al.
Publicado: (2023)

SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences
por: Rumpf, Maximilian-David, et al.
Publicado: (2023)

AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes
por: Kim, Jeremie S., et al.
Publicado: (2019)

TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering
por: Cavlak, Meryem Banu, et al.
Publicado: (2022)

Genome-on-Diet: Taming Large-Scale Genomic Analyses via Sparsified Genomics
por: Alser, Mohammed, et al.
Publicado: (2022)

RawAlign: Accurate, Fast, and Scalable Raw Nanopore Signal Mapping via Combining Seeding and Alignment
por: Lindegger, Joël, et al.
Publicado: (2023)

A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
por: Munteanu, Viorel, et al.
Publicado: (2023)

RUBICON: A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers
por: Singh, Gagandeep, et al.
Publicado: (2022)

SARS-CoV-2 Wastewater Genomic Surveillance: Approaches, Challenges, and Opportunities
por: Munteanu, Viorel, et al.
Publicado: (2023)

CiMBA: Accelerating Genome Sequencing through On-Device Basecalling via Compute-in-Memory
por: Simon, William Andrew, et al.
Publicado: (2025)

MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing
por: Ghiasi, Nika Mansouri, et al.
Publicado: (2024)

A CNN Approach to Polygenic Risk Prediction of Kidney Stone Formation
por: Salem, Amr, et al.
Publicado: (2024)

Multi‐trait multi‐environment genomic prediction of preliminary yield trial in pulse crop
por: Rica Amor Saludares, et al.
Publicado: (2024)

Gene and RNA Editing: Methods, Enabling Technologies, Applications, and Future Directions
por: Aledhari, Mohammed, et al.
Publicado: (2024)

Polygenic Risk Score in Africa Population: Progress and challenges
por: Adam, Yagoub, et al.
Publicado: (2021)

Genome‐wide association studies reveal genetic control of nutritional quality, milling traits, and agronomic characteristics in oat ( Avena sativa L.)
por: Naa Korkoi Ardayfio, et al.
Publicado: (2025)

Comparative Analysis of Multi-Omics Integration Using Advanced Graph Neural Networks for Cancer Classification
por: Alharbi, Fadi, et al.
Publicado: (2024)

Machine learning‐driven GWAS uncovers novel candidate genes for resistance to frosty pod rot and witches' broom disease in cacao
por: Ezekiel Ahn, et al.
Publicado: (2025)

Processing-in-memory for genomics workloads
por: Simon, William Andrew, et al.
Publicado: (2025)

A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
por: Davies, Billie E, et al.
Publicado: (2026)

Bernard‐Soulier Syndrome: Identification of a Novel GP1BB Variant in a Mauritanian Patient
por: Mohamed Lemine Salem, et al.
Publicado: (2026)

Trait mapping differentiates loci influencing spike and flag leaf glaucousness in wheat
por: Daniela Miller, et al.
Publicado: (2025)

Quantum-inspired algorithm for simulating viral response
por: Konina, Daria O., et al.
Publicado: (2025)

Rawsamble: Overlapping and Assembling Raw Nanopore Signals using a Hash-based Seeding Mechanism
por: Firtina, Can, et al.
Publicado: (2024)

A compound heterozygote case of glutaric aciduria type II in a patient carrying a novel candidate variant in ETFDH gene: A case report and literature review on compound heterozygote cases
por: Mohammad Reza Seyedtaghia, et al.
Publicado: (2024)

Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
por: Louvel, Guillaume, et al.
Publicado: (2024)

RawHash2: Mapping Raw Nanopore Signals Using Hash-Based Seeding and Adaptive Quantization
por: Firtina, Can, et al.
Publicado: (2023)

RawBench: A Comprehensive Benchmarking Framework for Raw Nanopore Signal Analysis Techniques
por: Eris, Furkan, et al.
Publicado: (2025)

Reference genome for the benthic marine diatom Psammoneis japonica: Bacterial associations and repeat-driven genome size evolution in diatoms.
por: Roberts, Wade R, et al.
Publicado: (2025)

A Bioinformatic Approach Validated Utilizing Machine Learning Algorithms to Identify Relevant Biomarkers and Crucial Pathways in Gallbladder Cancer
por: Khatun, Rabea, et al.
Publicado: (2024)

Population and herbarium genomics provide a comprehensive framework for a revision of Microcoleus (Cyanobacteria).
por: Skoupý, Svatopluk, et al.
Publicado: (2026)

Mutated neuron navigator 3 as a candidate gene for a rare neurodevelopmental disorder
por: Muhammad Umair, et al.
Publicado: (2024)

Polyphasic characterization and genomic insights of the cyanobacteria Aphanothece microscopica and A. stagnina from Southern Brazil with emphasis on fatty acid biosynthesis.
por: Delgado, Ronald Tarazona, et al.
Publicado: (2025)

DeepSeek‐Lattice‐KG: A Compact Language Model With Knowledge Graph Augmentation for Lattice Structure Design
por: Zhiyang Shu, et al.
Publicado: (2026)

Advancing genetic improvement in the omics era: status and priorities for United States aquaculture.
por: Andersen, Linnea K, et al.
Publicado: (2025)

The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology
por: Gill, Erin E., et al.
Publicado: (2024)

Two genomes of the white perch (Morone americana), an ecologically important teleost.
por: Paris, Josephine R, et al.
Publicado: (2025)

Genome sequence of a marine threespine stickleback (Gasterosteus aculeatus) from Rabbit Slough in the Cook Inlet.
por: Au, Eric H, et al.
Publicado: (2025)