Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype-phenotype maps
Fuente:
arXiv
Saved in:
| Main Authors: | Mascolo, Elia, Borbély, Réka, Herrera-Álvarez, Santiago, Guet, Calin C, Crocker, Justin, Tkačik, Gašper |
|---|---|
| Format: | Preprint |
| Published: |
2026
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges
by: Mascolo, Elia, et al.
Published: (2026)
by: Mascolo, Elia, et al.
Published: (2026)
Inferring genotype-phenotype maps using attention models
by: Rijal, Krishna, et al.
Published: (2025)
by: Rijal, Krishna, et al.
Published: (2025)
How is gene-regulatory evolution affected by cell-to-cell variability?
by: Dzib, Leonardo Ivan Estrella, et al.
Published: (2026)
by: Dzib, Leonardo Ivan Estrella, et al.
Published: (2026)
Addressing missing context in regulatory variation across primate evolution
by: Housman, Genevieve, et al.
Published: (2025)
by: Housman, Genevieve, et al.
Published: (2025)
Double-replica theory for evolution of genotype-phenotype interrelationship
by: Pham, Tuan Minh, et al.
Published: (2022)
by: Pham, Tuan Minh, et al.
Published: (2022)
Stochastic dynamics of two-compartment cell proliferation models with regulatory mechanisms for hematopoiesis
by: Wang, Ren-Yi, et al.
Published: (2024)
by: Wang, Ren-Yi, et al.
Published: (2024)
Method to monitor the evolution of an epidemic in real time
by: Trujillo, Justin, et al.
Published: (2020)
by: Trujillo, Justin, et al.
Published: (2020)
The challenge of scale in molecular adaptation: Local searches in astronomical genotype networks
by: Manrubia, Susanna, et al.
Published: (2026)
by: Manrubia, Susanna, et al.
Published: (2026)
A phenotype-structured reaction-diffusion model of avascular glioma growth
by: Ballatore, Francesca, et al.
Published: (2025)
by: Ballatore, Francesca, et al.
Published: (2025)
Cooperation guides evolution in a minimal model of biological evolution
by: Houghton, Conor
Published: (2025)
by: Houghton, Conor
Published: (2025)
Mathematical model of tumor-macrophage interactions: Elucidating the tumor-driven macrophage phenotype reprogramming
by: Zhang, Haifeng, et al.
Published: (2026)
by: Zhang, Haifeng, et al.
Published: (2026)
Highly conserved sequence-specific double-stranded DNA binding networks contributing to divergent genomic evolution of human and chimpanzee brain development
by: Glinsky, Gennadi
Published: (2024)
by: Glinsky, Gennadi
Published: (2024)
ESL-PSC Toolkit: a graphical software environment for linking shared genetic changes to convergent phenotypes
by: Allard, John B., et al.
Published: (2026)
by: Allard, John B., et al.
Published: (2026)
Emergence biases in molecular evolution
by: Fuqua, Timothy, et al.
Published: (2026)
by: Fuqua, Timothy, et al.
Published: (2026)
Modelling the impact of phenotypic heterogeneity on cell migration: a continuum framework derived from individual-based principles
by: Crossley, Rebecca M., et al.
Published: (2025)
by: Crossley, Rebecca M., et al.
Published: (2025)
Adaptive ratchets and the evolution of molecular complexity
by: Röschinger, Tom, et al.
Published: (2021)
by: Röschinger, Tom, et al.
Published: (2021)
Concepts and methods for predicting viral evolution
by: Meijers, Matthijs, et al.
Published: (2024)
by: Meijers, Matthijs, et al.
Published: (2024)
Genome evolution in an endangered freshwater mussel
by: Rogers, Rebekah L., et al.
Published: (2025)
by: Rogers, Rebekah L., et al.
Published: (2025)
The evolution of forecasting for decision making in dynamic environments
by: Tilman, Andrew R., et al.
Published: (2021)
by: Tilman, Andrew R., et al.
Published: (2021)
The evolution of asymmetrical regulation of physiology is central to aging
by: Simons, Mirre J P, et al.
Published: (2025)
by: Simons, Mirre J P, et al.
Published: (2025)
The co-evolution of direct, indirect and generalized reciprocity
by: Pal, Saptarshi, et al.
Published: (2024)
by: Pal, Saptarshi, et al.
Published: (2024)
Connecting IBD tracts and runs of homozygosity: A coalescent framework for inferring effective population size
by: Santiago, Enrique
Published: (2026)
by: Santiago, Enrique
Published: (2026)
Quasi-equilibrium states and phase transitions in biological evolution
by: Romanenko, Artem, et al.
Published: (2024)
by: Romanenko, Artem, et al.
Published: (2024)
Nuclear compensatory evolution driven by mito-nuclear incompatibilities
by: Princepe, Débora, et al.
Published: (2024)
by: Princepe, Débora, et al.
Published: (2024)
DNA Replication Timing, Genome Stability and Non-adaptive Radiation
by: Herrick, John
Published: (2025)
by: Herrick, John
Published: (2025)
A generalized Price equation for fuzzy set-mappings
by: Borgstede, Matthias
Published: (2023)
by: Borgstede, Matthias
Published: (2023)
Critically assessing atavism, an evolution-centered and deterministic hypothesis on cancer
by: Daignan-Fornier, Bertrand, et al.
Published: (2024)
by: Daignan-Fornier, Bertrand, et al.
Published: (2024)
Sex chromosome evolution: The classical paradigm and so much beyond
by: Veltsos, Paris, et al.
Published: (2024)
by: Veltsos, Paris, et al.
Published: (2024)
Adaptive efficiency of information processing in immune-pathogen co-evolution
by: Bellamy, Quinn N, et al.
Published: (2024)
by: Bellamy, Quinn N, et al.
Published: (2024)
MyESL: Sparse learning in molecular evolution and phylogenetic analysis
by: Sanderford, Maxwell, et al.
Published: (2025)
by: Sanderford, Maxwell, et al.
Published: (2025)
Multi-scale phylodynamic modelling of rapid punctuated pathogen evolution
by: Nguyen, Quang Dang, et al.
Published: (2024)
by: Nguyen, Quang Dang, et al.
Published: (2024)
Inferring resource competition in microbial communities from time series
by: Chen, Xiaowen, et al.
Published: (2025)
by: Chen, Xiaowen, et al.
Published: (2025)
Counting cherry reduction sequences is counting linear extensions (in phylogenetic tree-child networks)
by: Coronado, Tomás M., et al.
Published: (2024)
by: Coronado, Tomás M., et al.
Published: (2024)
Singular effect of linkage on long term genetic gain in the infinitesimal model
by: Tourrette, Elise, et al.
Published: (2024)
by: Tourrette, Elise, et al.
Published: (2024)
Evolutionary adaptation is facilitated by the presence of lethal genotypes
by: Blavatska, Viktoria, et al.
Published: (2023)
by: Blavatska, Viktoria, et al.
Published: (2023)
Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations
by: Reynes, Lauric, et al.
Published: (2024)
by: Reynes, Lauric, et al.
Published: (2024)
How host mobility patterns shape antigenic escape during viral-immune co-evolution
by: Blot, Natalie, et al.
Published: (2024)
by: Blot, Natalie, et al.
Published: (2024)
Cooperation as well as learning: A commentary on 'How learning can guide evolution' by Hinton and Nowlan
by: Houghton, Conor
Published: (2024)
by: Houghton, Conor
Published: (2024)
Using sequence data to study spatial scales of interactions driving spread of Highly Pathogenic Avian Influenza in Great Britain
by: Gamża, Anna, et al.
Published: (2024)
by: Gamża, Anna, et al.
Published: (2024)
Impact of complex spatial population structure on early and long-term adaptation in rugged fitness landscapes
by: Servajean, Richard, et al.
Published: (2024)
by: Servajean, Richard, et al.
Published: (2024)
Similar Items
-
Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges
by: Mascolo, Elia, et al.
Published: (2026) -
Inferring genotype-phenotype maps using attention models
by: Rijal, Krishna, et al.
Published: (2025) -
How is gene-regulatory evolution affected by cell-to-cell variability?
by: Dzib, Leonardo Ivan Estrella, et al.
Published: (2026) -
Addressing missing context in regulatory variation across primate evolution
by: Housman, Genevieve, et al.
Published: (2025) -
Double-replica theory for evolution of genotype-phenotype interrelationship
by: Pham, Tuan Minh, et al.
Published: (2022)