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Main Authors: Cui, Yuanning, Sun, Zequn, Hu, Wei, Xin, Kexuan, Fu, Zhangjie
Format: Preprint
Published: 2026
Subjects:
Online Access:https://arxiv.org/abs/2601.21174
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author Cui, Yuanning
Sun, Zequn
Hu, Wei
Xin, Kexuan
Fu, Zhangjie
author_facet Cui, Yuanning
Sun, Zequn
Hu, Wei
Xin, Kexuan
Fu, Zhangjie
contents Entity alignment (EA) is critical for knowledge graph (KG) fusion. Existing EA models lack transferability and are incapable of aligning unseen KGs without retraining. While using graph foundation models (GFMs) offer a solution, we find that directly adapting GFMs to EA remains largely ineffective. This stems from a critical "reasoning horizon gap": unlike link prediction in GFMs, EA necessitates capturing long-range dependencies across sparse and heterogeneous KG structuresTo address this challenge, we propose a EA foundation model driven by a parallel encoding strategy. We utilize seed EA pairs as local anchors to guide the information flow, initializing and encoding two parallel streams simultaneously. This facilitates anchor-conditioned message passing and significantly shortens the inference trajectory by leveraging local structural proximity instead of global search. Additionally, we incorporate a merged relation graph to model global dependencies and a learnable interaction module for precise matching. Extensive experiments verify the effectiveness of our framework, highlighting its strong generalizability to unseen KGs.
format Preprint
id arxiv_https___arxiv_org_abs_2601_21174
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Breaking the Reasoning Horizon in Entity Alignment Foundation Models
Cui, Yuanning
Sun, Zequn
Hu, Wei
Xin, Kexuan
Fu, Zhangjie
Machine Learning
Entity alignment (EA) is critical for knowledge graph (KG) fusion. Existing EA models lack transferability and are incapable of aligning unseen KGs without retraining. While using graph foundation models (GFMs) offer a solution, we find that directly adapting GFMs to EA remains largely ineffective. This stems from a critical "reasoning horizon gap": unlike link prediction in GFMs, EA necessitates capturing long-range dependencies across sparse and heterogeneous KG structuresTo address this challenge, we propose a EA foundation model driven by a parallel encoding strategy. We utilize seed EA pairs as local anchors to guide the information flow, initializing and encoding two parallel streams simultaneously. This facilitates anchor-conditioned message passing and significantly shortens the inference trajectory by leveraging local structural proximity instead of global search. Additionally, we incorporate a merged relation graph to model global dependencies and a learnable interaction module for precise matching. Extensive experiments verify the effectiveness of our framework, highlighting its strong generalizability to unseen KGs.
title Breaking the Reasoning Horizon in Entity Alignment Foundation Models
topic Machine Learning
url https://arxiv.org/abs/2601.21174