Image de couverture de livre

Beyond Conditional Computation: Retrieval-Augmented Genomic Foundation Models with Gengram

Fuente: arXiv

Enregistré dans:

Détails bibliographiques
Auteurs principaux:	Xu, Huinan, Feng, Xuyang, Chen, Junhong, Liu, Junchen, Deng, Kaiwen, Ding, Kai, Long, Shengning, Shuai, Jiaxue, Li, Zhaorong, Liu, Shiping, Xue, Guirong, Xiao, Zhan
Format:	Preprint
Publié:	2026
Sujets:	Genomics Artificial Intelligence
Accès en ligne:	Acceder al recurso
Tags:	Ajouter un tag Pas de tags, Soyez le premier à ajouter un tag!

Documents similaires

Genome-Factory: A Library for Tuning, Deploying, and Interpreting Genomic Foundation Models
par: Wu, Weimin, et autres
Publié: (2025)

GENERator: A Long-Context Generative Genomic Foundation Model
par: Wu, Wei, et autres
Publié: (2025)

Poisoning the Genome: Targeted Backdoor Attacks on DNA Foundation Models
par: Koilakos, Charalampos, et autres
Publié: (2026)

Cross-Species Antimicrobial Resistance Prediction from Genomic Foundation Models
par: Tai, Huilin
Publié: (2026)

Embedding Is (Almost) All You Need: Retrieval-Augmented Inference for Generalizable Genomic Prediction Tasks
par: Datta, Nirjhor, et autres
Publié: (2025)

oflorez/HumanGenomeAssemblies: Retrieving Target Regions from Human Genome Assemblies
par: oflorezvargas, et autres
Publié: (2025)

The Mitochondrial Genome of Cathaya argyrophylla Reaches 18.99 Mb: Analysis of Super-Large Mitochondrial Genomes in Pinaceae
par: Huang, Kerui, et autres
Publié: (2024)

Genome‐wide association study and molecular marker development for resistance to soybean cyst nematode in soybean
par: Shuo Qu, et autres
Publié: (2025)

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models
par: Liu, Zicheng, et autres
Publié: (2024)

A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
par: Davies, Billie E, et autres
Publié: (2026)

Genomic Correlation, Shared Loci, and Causal Relationship Between Bullous Pemphigoid and Atopic Dermatitis: A Large‐Scale Genome‐Wide Cross‐Trait Analysis
par: Qing Wang, et autres
Publié: (2024)

Genome‐wide Identification and expression analysis of TOR signaling pathway components in apple in response to low nitrogen
par: Dehai Liu, et autres
Publié: (2026)

Genomics in wheat improvement: Progress and perspectives
par: Shaoshuai Liu, et autres
Publié: (2026)

The Cathaya argyrophylla Genome Reveals the Evolutionary Trade-offs of a Living Fossil
par: Wang, Yun, et autres
Publié: (2026)

OGU: A Toolbox for Better Utilising Organelle Genomic Data.
par: Wu, Ping, et autres
Publié: (2025)

GVAtlas: Pioneering Genomic Variant Analysis and Visualization for SARS CoV 2 and Beyond
par: Tahir, Bhatti, et autres
Publié: (2025)

Genome‐wide association studies reveal environment‐dependent genetic associations for plant architecture in regional soybean germplasm
par: Pengshuo Shen, et autres
Publié: (2026)

Estimating Reproducibility in Genome-Wide Association Studies
par: Jiang, Wei, et autres
Publié: (2015)

SPACE: Your Genomic Profile Predictor is a Powerful DNA Foundation Model
par: Yang, Zhao, et autres
Publié: (2025)

GenomeQA: Benchmarking General Large Language Models for Genome Sequence Understanding
par: Long, Weicai, et autres
Publié: (2026)

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking
par: Yang, Heng, et autres
Publié: (2025)

JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures
par: Larey, Ariel, et autres
Publié: (2026)

OmniGenBench: Automating Large-scale in-silico Benchmarking for Genomic Foundation Models
par: Yang, Heng, et autres
Publié: (2024)

The Genomics Revolution in Nonmodel Species: Predictions vs. Reality for Salmonids.
par: May, Samuel A, et autres
Publié: (2025)

Comparative Genomics of Transisthmian Damselfishes (Abudefduf saxatilis and A. troschelii).
par: Tracy, Claire B, et autres
Publié: (2026)

Entropy, Disagreement, and the Limits of Foundation Models in Genomics
par: Rochkoulets, Maxime, et autres
Publié: (2026)

Genome‐wide association study and KASP marker development for starch quality traits in wheat
par: Yousheng Tian, et autres
Publié: (2024)

Toward Interpretable and Generalizable AI in Regulatory Genomics
par: Nagai, Masayuki, et autres
Publié: (2026)

Metadata-guided Feature Disentanglement for Functional Genomics
par: Rakowski, Alexander, et autres
Publié: (2024)

PlantBiMoE: A Bidirectional Foundation Model with SparseMoE for Plant Genomes
par: Lin, Kepeng, et autres
Publié: (2025)

Minimum-Cost Synthetic Genome Planning: An Algorithmic Framework
par: Patsakis, Michail, et autres
Publié: (2025)

Topological Sequence Analysis of Genomes: Category theory Approaches
par: Liu, Jian, et autres
Publié: (2025)

MBGD: Microbial Genome Database for Comparative Analysis Featuring Enhanced Functionality to Characterize Gene and Genome Functions Through Large-scale Orthology Analysis.
par: Uchiyama, Ikuo, et autres
Publié: (2025)

Genomic signatures of speciation and adaptation in the ctenophore Mnemiopsis.
par: Ketchum, Remi N, et autres
Publié: (2026)

Improving Genomic Models via Task-Specific Self-Pretraining
par: Mupparapu, Sohan, et autres
Publié: (2025)

DNAMotifTokenizer: Towards Biologically Informed Tokenization of Genomic Sequences
par: Zhou, Xiaoxiao, et autres
Publié: (2025)

Genome sequence of a marine threespine stickleback (Gasterosteus aculeatus) from Rabbit Slough in the Cook Inlet.
par: Au, Eric H, et autres
Publié: (2025)

PhageBench: Can LLMs Understand Raw Bacteriophage Genomes?
par: Hou, Yusen, et autres
Publié: (2026)

Chromosome-Level Genome Assembly and Annotation of the Japanese Cutlassfish (Trichiurus japonicus): A High-Quality Genomic Resource Featuring Nuclear and Mitochondrial Completeness for Future Studies.
par: Hsu, Po-Cheng, et autres
Publié: (2025)

The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation.
par: Kosch, Tiffany A, et autres
Publié: (2024)