Breaking Symmetry Bottlenecks in GNN Readouts

Fuente: arXiv
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Autori principali: Talhi, Mouad, Wolf, Arne, Monod, Anthea
Natura: Preprint
Pubblicazione: 2026
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author Talhi, Mouad
Wolf, Arne
Monod, Anthea
author_facet Talhi, Mouad
Wolf, Arne
Monod, Anthea
contents Graph neural networks (GNNs) are widely used for learning on structured data, yet their ability to distinguish non-isomorphic graphs is fundamentally limited. These limitations are usually attributed to message passing; in this work we show that an independent bottleneck arises at the readout stage. Using finite-dimensional representation theory, we prove that all linear permutation-invariant readouts, including sum and mean pooling, factor through the Reynolds (group-averaging) operator and therefore project node embeddings onto the fixed subspace of the permutation action, erasing all non-trivial symmetry-aware components regardless of encoder expressivity. This yields both a new expressivity barrier and an interpretable characterization of what global pooling preserves or destroys. To overcome this collapse, we introduce projector-based invariant readouts that decompose node representations into symmetry-aware channels and summarize them with nonlinear invariant statistics, preserving permutation invariance while retaining information provably invisible to averaging. Empirically, swapping only the readout enables fixed encoders to separate WL-hard graph pairs and improves performance across multiple benchmarks, demonstrating that readout design is a decisive and under-appreciated factor in GNN expressivity.
format Preprint
id arxiv_https___arxiv_org_abs_2602_05950
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Breaking Symmetry Bottlenecks in GNN Readouts
Talhi, Mouad
Wolf, Arne
Monod, Anthea
Machine Learning
Graph neural networks (GNNs) are widely used for learning on structured data, yet their ability to distinguish non-isomorphic graphs is fundamentally limited. These limitations are usually attributed to message passing; in this work we show that an independent bottleneck arises at the readout stage. Using finite-dimensional representation theory, we prove that all linear permutation-invariant readouts, including sum and mean pooling, factor through the Reynolds (group-averaging) operator and therefore project node embeddings onto the fixed subspace of the permutation action, erasing all non-trivial symmetry-aware components regardless of encoder expressivity. This yields both a new expressivity barrier and an interpretable characterization of what global pooling preserves or destroys. To overcome this collapse, we introduce projector-based invariant readouts that decompose node representations into symmetry-aware channels and summarize them with nonlinear invariant statistics, preserving permutation invariance while retaining information provably invisible to averaging. Empirically, swapping only the readout enables fixed encoders to separate WL-hard graph pairs and improves performance across multiple benchmarks, demonstrating that readout design is a decisive and under-appreciated factor in GNN expressivity.
title Breaking Symmetry Bottlenecks in GNN Readouts
topic Machine Learning
url https://arxiv.org/abs/2602.05950