Zero-shot System for Automatic Body Region Detection for Volumetric CT and MR Images

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Main Authors: Jush, Farnaz Khun, Werner, Grit, Klemens, Mark, Lenga, Matthias
Format: Preprint
Published: 2026
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author Jush, Farnaz Khun
Werner, Grit
Klemens, Mark
Lenga, Matthias
author_facet Jush, Farnaz Khun
Werner, Grit
Klemens, Mark
Lenga, Matthias
contents Reliable identification of anatomical body regions is a prerequisite for many automated medical imaging workflows, yet existing solutions remain heavily dependent on unreliable DICOM metadata. Current solutions mainly use supervised learning, which limits their applicability in many real-world scenarios. In this work, we investigate whether body region detection in volumetric CT and MR images can be achieved in a fully zero-shot manner by using knowledge embedded in large pre-trained foundation models. We propose and systematically evaluate three training-free pipelines: (1) a segmentation-driven rule-based system leveraging pre-trained multi-organ segmentation models, (2) a Multimodal Large Language Model (MLLM) guided by radiologist-defined rules, and (3) a segmentation-aware MLLM that combines visual input with explicit anatomical evidence. All methods are evaluated on 887 heterogeneous CT and MR scans with manually verified anatomical region labels. The segmentation-driven rule-based approach achieves the strongest and most consistent performance, with weighted F1-scores of 0.947 (CT) and 0.914 (MR), demonstrating robustness across modalities and atypical scan coverage. The MLLM performs competitively in visually distinctive regions, while the segmentation-aware MLLM reveals fundamental limitations.
format Preprint
id arxiv_https___arxiv_org_abs_2602_08717
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Zero-shot System for Automatic Body Region Detection for Volumetric CT and MR Images
Jush, Farnaz Khun
Werner, Grit
Klemens, Mark
Lenga, Matthias
Computer Vision and Pattern Recognition
Artificial Intelligence
Reliable identification of anatomical body regions is a prerequisite for many automated medical imaging workflows, yet existing solutions remain heavily dependent on unreliable DICOM metadata. Current solutions mainly use supervised learning, which limits their applicability in many real-world scenarios. In this work, we investigate whether body region detection in volumetric CT and MR images can be achieved in a fully zero-shot manner by using knowledge embedded in large pre-trained foundation models. We propose and systematically evaluate three training-free pipelines: (1) a segmentation-driven rule-based system leveraging pre-trained multi-organ segmentation models, (2) a Multimodal Large Language Model (MLLM) guided by radiologist-defined rules, and (3) a segmentation-aware MLLM that combines visual input with explicit anatomical evidence. All methods are evaluated on 887 heterogeneous CT and MR scans with manually verified anatomical region labels. The segmentation-driven rule-based approach achieves the strongest and most consistent performance, with weighted F1-scores of 0.947 (CT) and 0.914 (MR), demonstrating robustness across modalities and atypical scan coverage. The MLLM performs competitively in visually distinctive regions, while the segmentation-aware MLLM reveals fundamental limitations.
title Zero-shot System for Automatic Body Region Detection for Volumetric CT and MR Images
topic Computer Vision and Pattern Recognition
Artificial Intelligence
url https://arxiv.org/abs/2602.08717