Polarization-Multiplexed Bloch Surface Wave Sensing of Single-Strand DNA Growth
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| Autores principales: | , , , , , , , , , , |
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| Formato: | Preprint |
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2026
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| _version_ | 1866908833641660416 |
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| author | Barolak, Jonathan Mogni, Erika Pellegrini, Giovanni Gil-Rostra, Jorge Yubero, Francisco Celebrano, Michele Finazzi, Marco Schmidt, Katharina Fossati, Stefan Dostálek, Jakub Biagioni, Paolo |
| author_facet | Barolak, Jonathan Mogni, Erika Pellegrini, Giovanni Gil-Rostra, Jorge Yubero, Francisco Celebrano, Michele Finazzi, Marco Schmidt, Katharina Fossati, Stefan Dostálek, Jakub Biagioni, Paolo |
| contents | Refractometric biosensing is a vital label-free tool for the real time detection and interaction analysis of biological and chemical substances. Nanophotonic platforms like Surface Plasmon Resonance (SPR) have played a critical role in providing refractometric sensing capabilities for clinical diagnostics and environmental monitoring. However, traditional systems operating in a single-polarization state cannot fully characterize complex optical properties such as birefringence, which is crucial to resolve many complex biological interactions. Although Bloch Surface Wave (BSW) sensors can support both TE and TM modes, a key capability SPR lacks, they have historically been implemented in single-mode configurations. In this paper, we present a polarization multiplexed BSW refractometric sensing system, simultaneously tracking the resonant wavelength shifts of both TE and TM BSW modes through time. Our technique was applied to investigate single-strand DNA growth during rolling circle amplification (RCA). To accurately recover the time-dependent birefringence, capturing dynamics of the DNA growth and orientation of its chains, we implemented a two-stage modeling approach based on the TMM. First, we utilized a wavelength-dependent surface sensitivity model, confining refractive index changes to the immediate layer above the crystal, to distinguish isotropic background dynamics from birefringent signals. Following the onset of RCA, we transitioned to a model that accounted for the vertical growth of the DNA layers in time. By fitting this model to the TE and TM resonant shifts, we monitor the growth rate of the single-strand DNA layer as well as the refractive index along the two polarization components. Our findings demonstrate the platform's ability to resolve the structural evolution of complex bimolecular interactions associated with conformational changes. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2602_13012 |
| institution | arXiv |
| publishDate | 2026 |
| record_format | arxiv |
| spellingShingle | Polarization-Multiplexed Bloch Surface Wave Sensing of Single-Strand DNA Growth Barolak, Jonathan Mogni, Erika Pellegrini, Giovanni Gil-Rostra, Jorge Yubero, Francisco Celebrano, Michele Finazzi, Marco Schmidt, Katharina Fossati, Stefan Dostálek, Jakub Biagioni, Paolo Optics Refractometric biosensing is a vital label-free tool for the real time detection and interaction analysis of biological and chemical substances. Nanophotonic platforms like Surface Plasmon Resonance (SPR) have played a critical role in providing refractometric sensing capabilities for clinical diagnostics and environmental monitoring. However, traditional systems operating in a single-polarization state cannot fully characterize complex optical properties such as birefringence, which is crucial to resolve many complex biological interactions. Although Bloch Surface Wave (BSW) sensors can support both TE and TM modes, a key capability SPR lacks, they have historically been implemented in single-mode configurations. In this paper, we present a polarization multiplexed BSW refractometric sensing system, simultaneously tracking the resonant wavelength shifts of both TE and TM BSW modes through time. Our technique was applied to investigate single-strand DNA growth during rolling circle amplification (RCA). To accurately recover the time-dependent birefringence, capturing dynamics of the DNA growth and orientation of its chains, we implemented a two-stage modeling approach based on the TMM. First, we utilized a wavelength-dependent surface sensitivity model, confining refractive index changes to the immediate layer above the crystal, to distinguish isotropic background dynamics from birefringent signals. Following the onset of RCA, we transitioned to a model that accounted for the vertical growth of the DNA layers in time. By fitting this model to the TE and TM resonant shifts, we monitor the growth rate of the single-strand DNA layer as well as the refractive index along the two polarization components. Our findings demonstrate the platform's ability to resolve the structural evolution of complex bimolecular interactions associated with conformational changes. |
| title | Polarization-Multiplexed Bloch Surface Wave Sensing of Single-Strand DNA Growth |
| topic | Optics |
| url | https://arxiv.org/abs/2602.13012 |