ELISA: An Interpretable Hybrid Generative AI Agent for Expression-Grounded Discovery in Single-Cell Genomics
Fuente:
arXiv
Saved in:
| Main Author: | Coser, Omar |
|---|---|
| Format: | Preprint |
| Published: |
2026
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Systematic Evaluation of Single-Cell Foundation Model Interpretability Reveals Attention Captures Co-Expression Rather Than Unique Regulatory Signal
by: Kendiukhov, Ihor
Published: (2026)
by: Kendiukhov, Ihor
Published: (2026)
scBench: Evaluating AI Agents on Single-Cell RNA-seq Analysis
by: Workman, Kenny, et al.
Published: (2026)
by: Workman, Kenny, et al.
Published: (2026)
scPilot: Large Language Model Reasoning Toward Automated Single-Cell Analysis and Discovery
by: Gao, Yiming, et al.
Published: (2026)
by: Gao, Yiming, et al.
Published: (2026)
Nano Bio-Agents (NBA): Small Language Model Agents for Genomics
by: Hong, George, et al.
Published: (2025)
by: Hong, George, et al.
Published: (2025)
JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures
by: Larey, Ariel, et al.
Published: (2026)
by: Larey, Ariel, et al.
Published: (2026)
scUnified: An AI-Ready Standardized Resource for Single-Cell RNA Sequencing Analysis
by: Xu, Ping, et al.
Published: (2025)
by: Xu, Ping, et al.
Published: (2025)
Celler:A Genomic Language Model for Long-Tailed Single-Cell Annotation
by: Zhao, Huan, et al.
Published: (2025)
by: Zhao, Huan, et al.
Published: (2025)
Toward a Team of AI-made Scientists for Scientific Discovery from Gene Expression Data
by: Liu, Haoyang, et al.
Published: (2024)
by: Liu, Haoyang, et al.
Published: (2024)
Enhanced Gene Selection in Single-Cell Genomics: Pre-Filtering Synergy and Reinforced Optimization
by: Zhang, Weiliang, et al.
Published: (2024)
by: Zhang, Weiliang, et al.
Published: (2024)
Absorb & Escape: Overcoming Single Model Limitations in Generating Genomic Sequences
by: Li, Zehui, et al.
Published: (2024)
by: Li, Zehui, et al.
Published: (2024)
scInterpreter: Training Large Language Models to Interpret scRNA-seq Data for Cell Type Annotation
by: Li, Cong, et al.
Published: (2024)
by: Li, Cong, et al.
Published: (2024)
scGSDR: Harnessing Gene Semantics for Single-Cell Pharmacological Profiling
by: Huang, Yu-An, et al.
Published: (2025)
by: Huang, Yu-An, et al.
Published: (2025)
scCluBench: Comprehensive Benchmarking of Clustering Algorithms for Single-Cell RNA Sequencing
by: Xu, Ping, et al.
Published: (2025)
by: Xu, Ping, et al.
Published: (2025)
Bridging Large Language Models and Single-Cell Transcriptomics in Dissecting Selective Motor Neuron Vulnerability
by: Jiang, Douglas, et al.
Published: (2025)
by: Jiang, Douglas, et al.
Published: (2025)
Set-Aggregated Genome Embeddings for Microbiome Abundance Prediction
by: Kim, Younhun, et al.
Published: (2026)
by: Kim, Younhun, et al.
Published: (2026)
A Versatile AI Agent for Rare Disease Diagnosis and Risk Gene Prioritization
by: Liu, Tianyu, et al.
Published: (2026)
by: Liu, Tianyu, et al.
Published: (2026)
Learning to Discover Regulatory Elements for Gene Expression Prediction
by: Su, Xingyu, et al.
Published: (2025)
by: Su, Xingyu, et al.
Published: (2025)
Beyond Conditional Computation: Retrieval-Augmented Genomic Foundation Models with Gengram
by: Xu, Huinan, et al.
Published: (2026)
by: Xu, Huinan, et al.
Published: (2026)
CellxPert: Inference-Time MCMC Steering of a Multi-Omics Single-Cell Foundation Model for In-Silico Perturbation
by: Demir, Andac, et al.
Published: (2026)
by: Demir, Andac, et al.
Published: (2026)
Knowledge-Guided Biomarker Identification for Label-Free Single-Cell RNA-Seq Data: A Reinforcement Learning Perspective
by: Xiao, Meng, et al.
Published: (2025)
by: Xiao, Meng, et al.
Published: (2025)
CellAgent: An LLM-driven Multi-Agent Framework for Automated Single-cell Data Analysis
by: Xiao, Yihang, et al.
Published: (2024)
by: Xiao, Yihang, et al.
Published: (2024)
VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
by: Li, Siyuan, et al.
Published: (2024)
by: Li, Siyuan, et al.
Published: (2024)
GenoMAS: A Multi-Agent Framework for Scientific Discovery via Code-Driven Gene Expression Analysis
by: Liu, Haoyang, et al.
Published: (2025)
by: Liu, Haoyang, et al.
Published: (2025)
GenoTEX: An LLM Agent Benchmark for Automated Gene Expression Data Analysis
by: Liu, Haoyang, et al.
Published: (2024)
by: Liu, Haoyang, et al.
Published: (2024)
Leveraging Gene Expression Data and Explainable Machine Learning for Enhanced Early Detection of Type 2 Diabetes
by: Roy, Aurora Lithe, et al.
Published: (2024)
by: Roy, Aurora Lithe, et al.
Published: (2024)
Gene Incremental Learning for Single-Cell Transcriptomics
by: Qi, Jiaxin, et al.
Published: (2025)
by: Qi, Jiaxin, et al.
Published: (2025)
Incorporating LLM Embeddings for Variation Across the Human Genome
by: Niu, Hongqian, et al.
Published: (2025)
by: Niu, Hongqian, et al.
Published: (2025)
Interpretable graph-based models on multimodal biomedical data integration: A technical review and benchmarking
by: Sadeghi, Alireza, et al.
Published: (2025)
by: Sadeghi, Alireza, et al.
Published: (2025)
LA-MARRVEL: A Knowledge-Grounded, Language-Aware LLM Framework for Clinically Robust Rare Disease Gene Prioritization
by: Lee, Jaeyeon, et al.
Published: (2025)
by: Lee, Jaeyeon, et al.
Published: (2025)
Single Cells Are Spatial Tokens: Transformers for Spatial Transcriptomic Data Imputation
by: Wen, Hongzhi, et al.
Published: (2023)
by: Wen, Hongzhi, et al.
Published: (2023)
A Linear-Transformer Hybrid for SNP-Based Genotype-to-Phenotype Prediction in Grapevine
by: Wang, Yibin, et al.
Published: (2026)
by: Wang, Yibin, et al.
Published: (2026)
Multi-Dimensional Spectral Geometry of Biological Knowledge in Single-Cell Transformer Representations
by: Kendiukhov, Ihor
Published: (2026)
by: Kendiukhov, Ihor
Published: (2026)
GQVis: A Dataset of Genomics Data Questions and Visualizations for Generative AI
by: Walters, Skylar Sargent, et al.
Published: (2025)
by: Walters, Skylar Sargent, et al.
Published: (2025)
Helix-mRNA: A Hybrid Foundation Model For Full Sequence mRNA Therapeutics
by: Wood, Matthew, et al.
Published: (2025)
by: Wood, Matthew, et al.
Published: (2025)
Interpretable DNA Sequence Classification via Dynamic Feature Generation in Decision Trees
by: Huynh, Nicolas, et al.
Published: (2026)
by: Huynh, Nicolas, et al.
Published: (2026)
Genomic Next-Token Predictors are In-Context Learners
by: Breslow, Nathan, et al.
Published: (2025)
by: Breslow, Nathan, et al.
Published: (2025)
Multimodal 3D Genome Pre-training
by: Yang, Minghao, et al.
Published: (2025)
by: Yang, Minghao, et al.
Published: (2025)
xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data
by: Gong, Jing, et al.
Published: (2023)
by: Gong, Jing, et al.
Published: (2023)
Efficient and Scalable Fine-Tune of Language Models for Genome Understanding
by: Zhan, Huixin, et al.
Published: (2024)
by: Zhan, Huixin, et al.
Published: (2024)
SAE-RNA: A Sparse Autoencoder Model for Interpreting RNA Language Model Representations
by: Kim, Taehan, et al.
Published: (2025)
by: Kim, Taehan, et al.
Published: (2025)
Similar Items
-
Systematic Evaluation of Single-Cell Foundation Model Interpretability Reveals Attention Captures Co-Expression Rather Than Unique Regulatory Signal
by: Kendiukhov, Ihor
Published: (2026) -
scBench: Evaluating AI Agents on Single-Cell RNA-seq Analysis
by: Workman, Kenny, et al.
Published: (2026) -
scPilot: Large Language Model Reasoning Toward Automated Single-Cell Analysis and Discovery
by: Gao, Yiming, et al.
Published: (2026) -
Nano Bio-Agents (NBA): Small Language Model Agents for Genomics
by: Hong, George, et al.
Published: (2025) -
JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures
by: Larey, Ariel, et al.
Published: (2026)