Polymer-Residue Accessibility Shapes Sequence Dependence of Critical Temperatures for Phase Separation
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| Main Authors: | , , , , |
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| Format: | Preprint |
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2026
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| _version_ | 1866917337866698752 |
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| author | de Souza, J. Pedro Sorkin, Benjamin Akkiraju, Amala Panagiotopoulos, Athanassios Z. Stone, Howard A. |
| author_facet | de Souza, J. Pedro Sorkin, Benjamin Akkiraju, Amala Panagiotopoulos, Athanassios Z. Stone, Howard A. |
| contents | Biological polymers, such as intrinsically disordered proteins, play a central role in cellular biology, including mediating phase separation and controlling activity of biological condensates. The physical properties and functions of biopolymers are determined by their residue sequence. Recently, significant computational and theoretical efforts have been devoted to characterizing the combinatorially complex sequence dependence of biopolymer phase diagrams. Here, we quantitatively show that monomer accessibility is central to determining the strength of pair interactions. We formulate an analytical perturbative approach, phenomenologically precluding two polymers' centers of mass from overlapping within a correlation hole. This theory yields the correction to the strength of mean-field interactions in terms of a residue-accessibility parameter (RAP), which accounts for the limited availability of inner monomers to interactions. Despite the simplicity of the approach, RAP rationalizes the variations in critical temperatures found in extensive Monte-Carlo simulations for thousands of two-letter polymer solutions of varying length and sequence. RAP may thus be effective for deciphering the polymer-sequence dependence of phase diagrams given any polymer length, set of monomer types, and polymer mixtures. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2603_12534 |
| institution | arXiv |
| publishDate | 2026 |
| record_format | arxiv |
| spellingShingle | Polymer-Residue Accessibility Shapes Sequence Dependence of Critical Temperatures for Phase Separation de Souza, J. Pedro Sorkin, Benjamin Akkiraju, Amala Panagiotopoulos, Athanassios Z. Stone, Howard A. Soft Condensed Matter Statistical Mechanics Biological Physics Chemical Physics Biological polymers, such as intrinsically disordered proteins, play a central role in cellular biology, including mediating phase separation and controlling activity of biological condensates. The physical properties and functions of biopolymers are determined by their residue sequence. Recently, significant computational and theoretical efforts have been devoted to characterizing the combinatorially complex sequence dependence of biopolymer phase diagrams. Here, we quantitatively show that monomer accessibility is central to determining the strength of pair interactions. We formulate an analytical perturbative approach, phenomenologically precluding two polymers' centers of mass from overlapping within a correlation hole. This theory yields the correction to the strength of mean-field interactions in terms of a residue-accessibility parameter (RAP), which accounts for the limited availability of inner monomers to interactions. Despite the simplicity of the approach, RAP rationalizes the variations in critical temperatures found in extensive Monte-Carlo simulations for thousands of two-letter polymer solutions of varying length and sequence. RAP may thus be effective for deciphering the polymer-sequence dependence of phase diagrams given any polymer length, set of monomer types, and polymer mixtures. |
| title | Polymer-Residue Accessibility Shapes Sequence Dependence of Critical Temperatures for Phase Separation |
| topic | Soft Condensed Matter Statistical Mechanics Biological Physics Chemical Physics |
| url | https://arxiv.org/abs/2603.12534 |