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Main Authors: Maqsood, Muhammad Hassan, Zhu, Yanming, Lam, Alfred, Dagnaw, Getamesay, Yin, Xuefei, Liew, Alan Wee-Chung
Format: Preprint
Published: 2026
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Online Access:https://arxiv.org/abs/2603.20326
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author Maqsood, Muhammad Hassan
Zhu, Yanming
Lam, Alfred
Dagnaw, Getamesay
Yin, Xuefei
Liew, Alan Wee-Chung
author_facet Maqsood, Muhammad Hassan
Zhu, Yanming
Lam, Alfred
Dagnaw, Getamesay
Yin, Xuefei
Liew, Alan Wee-Chung
contents Histopathology nuclei segmentation is crucial for quantitative tissue analysis and cancer diagnosis. Although existing segmentation methods have achieved strong performance, they are often computationally heavy and show limited generalization across datasets, which constrains their practical deployment. Recent SAM-based approaches have shown great potential in general and medical imaging, but typically rely on prompt guidance or complex decoders, making them less suitable for histopathology images with dense nuclei and heterogeneous appearances. We propose a prompt-free and lightweight SAM adaptation that leverages multi-level encoder features and residual decoding for accurate and efficient nuclei segmentation. The framework fine-tunes only LoRA modules within the frozen SAM encoder, requiring just 4.1M trainable parameters. Experiments on three benchmark datasets TNBC, MoNuSeg, and PanNuke demonstrate state-of-the-art performance and strong cross-dataset generalization, highlighting the effectiveness and practicality of the proposed framework for histopathology applications.
format Preprint
id arxiv_https___arxiv_org_abs_2603_20326
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Prompt-Free Lightweight SAM Adaptation for Histopathology Nuclei Segmentation with Strong Cross-Dataset Generalization
Maqsood, Muhammad Hassan
Zhu, Yanming
Lam, Alfred
Dagnaw, Getamesay
Yin, Xuefei
Liew, Alan Wee-Chung
Computer Vision and Pattern Recognition
Histopathology nuclei segmentation is crucial for quantitative tissue analysis and cancer diagnosis. Although existing segmentation methods have achieved strong performance, they are often computationally heavy and show limited generalization across datasets, which constrains their practical deployment. Recent SAM-based approaches have shown great potential in general and medical imaging, but typically rely on prompt guidance or complex decoders, making them less suitable for histopathology images with dense nuclei and heterogeneous appearances. We propose a prompt-free and lightweight SAM adaptation that leverages multi-level encoder features and residual decoding for accurate and efficient nuclei segmentation. The framework fine-tunes only LoRA modules within the frozen SAM encoder, requiring just 4.1M trainable parameters. Experiments on three benchmark datasets TNBC, MoNuSeg, and PanNuke demonstrate state-of-the-art performance and strong cross-dataset generalization, highlighting the effectiveness and practicality of the proposed framework for histopathology applications.
title Prompt-Free Lightweight SAM Adaptation for Histopathology Nuclei Segmentation with Strong Cross-Dataset Generalization
topic Computer Vision and Pattern Recognition
url https://arxiv.org/abs/2603.20326