Cover Image

A practical introduction to ODE modelling in Stan for biological systems

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Hamis, Sara, Forslund, John, Gu, Cici Chen, Cochrane, Jodie A.
Format:	Preprint
Published:	2026
Subjects:	Computation Applications
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Estimating Default Probability and Correlation using Stan
by: Pinera-Esquivel, Jesus A.
Published: (2024)

StanBKT: Rethinking Parameter Estimation in Bayesian Knowledge Tracing
by: Pradhan, Siddhartha, et al.
Published: (2026)

RobustCalibration: Robust Calibration of Computer Models in R
by: Gu, Mengyang
Published: (2022)

A Gaussian process based approach for validation of multi-variable measurement systems: application to SAR measurement systems
by: Bujard, C., et al.
Published: (2022)

A brief introduction on latent variable based ordinal regression models with an application to survey data
by: Wieditz, Johannes, et al.
Published: (2023)

Physics-Informed Neural Networks for Biological $2\mathrm{D}{+}t$ Reaction-Diffusion Systems
by: Lavery, William, et al.
Published: (2026)

Fast Bayesian inference for spatial mean-parameterized Conway-Maxwell-Poisson models
by: Kang, Bokgyeong, et al.
Published: (2023)

The inverse Kalman filter
by: Fang, Xinyi, et al.
Published: (2024)

Data-driven modeling and prediction of microglial cell dynamics in the ischemic penumbra
by: Amato, Sara, et al.
Published: (2024)

Teaching design and implementation of traffic system simulation course based on a computer virtual reality software under the background of engineering education
by: Ying‐Ying Liu, et al.
Published: (2024)

mNARX+: A surrogate model for complex dynamical systems using manifold-NARX and automatic feature selection
by: Schär, S., et al.
Published: (2025)

gemlib: Probabilistic programming for epidemic models
by: Morariu, Alin, et al.
Published: (2025)

A Python implementation of some geometric tools on Kendall 3D shape space for practical applications
by: Valero, Jorge, et al.
Published: (2026)

Identifying microbial drivers in biological phenotypes with a Bayesian Network Regression model
by: Ozminkowski, Samuel, et al.
Published: (2022)

A physics and data co-driven surrogate modeling method for high-dimensional rare event simulation
by: Xian, Jianhua, et al.
Published: (2023)

Data Assimilation for Robust UQ Within Agent-Based Simulation on HPC Systems
by: Spannaus, Adam, et al.
Published: (2025)

An Augmented Rating System for Test cricket: adapting Glicko's model
by: Bandyopadhyay, Rhitankar, et al.
Published: (2026)

Disclosure risk assessment with Bayesian non-parametric hierarchical modelling
by: Battiston, Marco, et al.
Published: (2024)

A nonstationary spatial model of PM2.5 with localized transfer learning from numerical model output
by: Gong, Wenlong, et al.
Published: (2025)

Interval-Censored Survival Analysis of Grapevine Phenology: Thermal Controls on Flowering and Fruit Ripening
by: Behnamian, Sara, et al.
Published: (2025)

Sequential Bayesian inference for stochastic epidemic models of cumulative incidence
by: Whitaker, Sam A., et al.
Published: (2024)

Educational impact of Metaverse learning environment for engineering mechanics dynamics
by: Manjit S. Sidhu, et al.
Published: (2024)

Research and innovation of engineering simulation practice teaching platform based on the civil engineering talent training
by: Nan Li, et al.
Published: (2024)

Maritime Vessel Tracking
by: Scott, John Mahlon, et al.
Published: (2025)

Adaptive sequential Monte Carlo for structured cross validation in Bayesian hierarchical models
by: Han, Geonhee, et al.
Published: (2025)

Automatic cross-validation in structured models: Is it time to leave out leave-one-out?
by: Adin, A., et al.
Published: (2023)

Logistic regression models: practical induced prior specification
by: Newman, Ken B., et al.
Published: (2025)

Applications of higher order Markov models and Pressure Index to strategize controlled run chases in Twenty20 cricket
by: Bandyopadhyay, Rhitankar, et al.
Published: (2025)

Identifying Spatiotemporal Patterns in Opioid Vulnerability: Investigating the Links Between Disability, Prescription Opioids and Opioid-Related Mortality
by: Deas, Andrew, et al.
Published: (2024)

Construction of a new lifelong education system based on vector analysis algorithms for information age services
by: Yongfang Zhang, et al.
Published: (2024)

Hybrid$^2$ Neural ODE Causal Modeling and an Application to Glycemic Response
by: Zou, Bob Junyi, et al.
Published: (2024)

Theory and practice of BIM skills of construction management professional based on conceive–design–implement–operate engineering teaching mode
by: Nan Li, et al.
Published: (2024)

Virtual sensing of subsoil strain response in monopile-based offshore wind turbines via Gaussian process latent force models
by: Zou, Joanna, et al.
Published: (2022)

Joining and splitting models with Markov melding
by: Goudie, Robert J. B., et al.
Published: (2016)

Students' Conceptual Explanations of Neural Networks Enabled by Extended Reality Learning: A Multiple Methods Approach
by: Miguel A. Feijoo‐Garcia, et al.
Published: (2025)

Large Language Models for Full-Text Methods Assessment: A Case Study on Mediation Analysis
by: Zhang, Wenqing, et al.
Published: (2025)

A functional regression model for heterogeneous BioGeoChemical Argo data in the Southern Ocean
by: Korte-Stapff, Moritz, et al.
Published: (2022)

Disentangling the effects of multifunctional forestry practices on the abundances of birds and their invertebrate prey
by: João Manuel Cordeiro Pereira, et al.
Published: (2026)

Adoption and implication of the Biased-Annotator Competence Estimation (BACE) model into COVID-19 vaccine Twitter data: Human annotation for latent message features
by: Sun, Luhang, et al.
Published: (2023)

Fast and robust invariant generalized linear models
by: Knight, Parker, et al.
Published: (2025)