Saved in:
| Main Authors: | Xiao, Hanlin, Breitling, Rainer, Takano, Eriko, Álvarez, Mauricio A. |
|---|---|
| Format: | Preprint |
| Published: |
2026
|
| Subjects: | |
| Online Access: | https://arxiv.org/abs/2603.20825 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Disentangling Similarity and Relatedness in Topic Models
by: Xiao, Hanlin, et al.
Published: (2026)
by: Xiao, Hanlin, et al.
Published: (2026)
Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient Clustering
by: Jiao, Shujian, et al.
Published: (2024)
by: Jiao, Shujian, et al.
Published: (2024)
Scaling Up ESM2 Architectures for Long Protein Sequences Analysis: Long and Quantized Approaches
by: de Oliveira, Gabriel Bianchin, et al.
Published: (2025)
by: de Oliveira, Gabriel Bianchin, et al.
Published: (2025)
Bidirectional Representations Augmented Autoregressive Biological Sequence Generation
by: Zhang, Xiang, et al.
Published: (2025)
by: Zhang, Xiang, et al.
Published: (2025)
DNAZEN: Enhanced Gene Sequence Representations via Mixed Granularities of Coding Units
by: Mao, Lei, et al.
Published: (2025)
by: Mao, Lei, et al.
Published: (2025)
Metabolomic Profiling of Soil Streptomyces : Open‐Source Datasets for Microbial Interaction Studies
by: Jack A. Connolly, et al.
Published: (2026)
by: Jack A. Connolly, et al.
Published: (2026)
Improving PTM Site Prediction by Coupling of Multi-Granularity Structure and Multi-Scale Sequence Representation
by: Li, Zhengyi, et al.
Published: (2024)
by: Li, Zhengyi, et al.
Published: (2024)
On Representation Complexity of Model-based and Model-free Reinforcement Learning
by: Zhu, Hanlin, et al.
Published: (2023)
by: Zhu, Hanlin, et al.
Published: (2023)
ESM: A Framework for Building Effective Surrogate Models for Hardware-Aware Neural Architecture Search
by: Nasir, Azaz-Ur-Rehman, et al.
Published: (2025)
by: Nasir, Azaz-Ur-Rehman, et al.
Published: (2025)
Semantic-Fused Multi-Granularity Cross-City Traffic Prediction
by: Chen, Kehua, et al.
Published: (2023)
by: Chen, Kehua, et al.
Published: (2023)
pLDDT-Predictor: High-speed Protein Screening Using Transformer and ESM2
by: Chae, Joongwon, et al.
Published: (2024)
by: Chae, Joongwon, et al.
Published: (2024)
Curriculum Learning for Biological Sequence Prediction: The Case of De Novo Peptide Sequencing
by: Zhang, Xiang, et al.
Published: (2025)
by: Zhang, Xiang, et al.
Published: (2025)
Kernel-Based Evaluation of Conditional Biological Sequence Models
by: Glaser, Pierre, et al.
Published: (2025)
by: Glaser, Pierre, et al.
Published: (2025)
Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing
by: Qiu, Zijie, et al.
Published: (2025)
by: Qiu, Zijie, et al.
Published: (2025)
Learning Granularity Representation for Temporal Knowledge Graph Completion
by: Zhang, Jinchuan, et al.
Published: (2024)
by: Zhang, Jinchuan, et al.
Published: (2024)
Spatial-Temporal Cross-View Contrastive Pre-training for Check-in Sequence Representation Learning
by: Gong, Letian, et al.
Published: (2024)
by: Gong, Letian, et al.
Published: (2024)
Connecting Neural Models Latent Geometries with Relative Geodesic Representations
by: Yu, Hanlin, et al.
Published: (2025)
by: Yu, Hanlin, et al.
Published: (2025)
BiJEPA: Bi-directional Joint Embedding Predictive Architecture for Symmetric Representation Learning
by: Huang, Yongchao
Published: (2026)
by: Huang, Yongchao
Published: (2026)
Generation of Granular-Balls for Clustering Based on the Principle of Justifiable Granularity
by: Jia, Zihang, et al.
Published: (2024)
by: Jia, Zihang, et al.
Published: (2024)
Breaking the Euclidean Barrier: Hyperboloid-Based Biological Sequence Analysis
by: Ali, Sarwan, et al.
Published: (2025)
by: Ali, Sarwan, et al.
Published: (2025)
GBRIP: Granular Ball Representation for Imbalanced Partial Label Learning
by: Huang, Jintao, et al.
Published: (2024)
by: Huang, Jintao, et al.
Published: (2024)
Emergence of Spatial Representation in an Actor-Critic Agent with Hippocampus-Inspired Sequence Generator
by: Lin, Xiao-Xiong, et al.
Published: (2025)
by: Lin, Xiao-Xiong, et al.
Published: (2025)
ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular Modeling
by: Zheng, Kangjie, et al.
Published: (2024)
by: Zheng, Kangjie, et al.
Published: (2024)
Scalable Sample-Level Causal Discovery in Event Sequences via Autoregressive Density Estimation
by: Math, Hugo, et al.
Published: (2026)
by: Math, Hugo, et al.
Published: (2026)
Controllable Sequence Editing for Biological and Clinical Trajectories
by: Li, Michelle M., et al.
Published: (2025)
by: Li, Michelle M., et al.
Published: (2025)
A Theoretical Analysis of Efficiency Constrained Utility-Privacy Bi-Objective Optimization in Federated Learning
by: Gu, Hanlin, et al.
Published: (2023)
by: Gu, Hanlin, et al.
Published: (2023)
Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling
by: Schiff, Yair, et al.
Published: (2024)
by: Schiff, Yair, et al.
Published: (2024)
Bi-level Contrastive Learning for Knowledge-Enhanced Molecule Representations
by: Jiang, Pengcheng, et al.
Published: (2023)
by: Jiang, Pengcheng, et al.
Published: (2023)
Discovering Hierarchical Latent Capabilities of Language Models via Causal Representation Learning
by: Jin, Jikai, et al.
Published: (2025)
by: Jin, Jikai, et al.
Published: (2025)
Lyra: An Efficient and Expressive Subquadratic Architecture for Modeling Biological Sequences
by: Ramesh, Krithik, et al.
Published: (2025)
by: Ramesh, Krithik, et al.
Published: (2025)
Improved Off-policy Reinforcement Learning in Biological Sequence Design
by: Kim, Hyeonah, et al.
Published: (2024)
by: Kim, Hyeonah, et al.
Published: (2024)
Biosecurity-Aware AI: Agentic Risk Auditing of Soft Prompt Attacks on ESM-Based Variant Predictors
by: Zhan, Huixin
Published: (2025)
by: Zhan, Huixin
Published: (2025)
Sequence-to-Image Transformation for Sequence Classification Using Rips Complex Construction and Chaos Game Representation
by: Ali, Sarwan, et al.
Published: (2025)
by: Ali, Sarwan, et al.
Published: (2025)
Boosting t-SNE Efficiency for Sequencing Data: Insights from Kernel Selection
by: Jan, Avais, et al.
Published: (2025)
by: Jan, Avais, et al.
Published: (2025)
Granular Ball Twin Support Vector Machine
by: Quadir, A., et al.
Published: (2024)
by: Quadir, A., et al.
Published: (2024)
DC Algorithm for Estimation of Sparse Gaussian Graphical Models
by: Shiratori, Tomokaze, et al.
Published: (2024)
by: Shiratori, Tomokaze, et al.
Published: (2024)
GROOT: Effective Design of Biological Sequences with Limited Experimental Data
by: Tran, Thanh V. T., et al.
Published: (2024)
by: Tran, Thanh V. T., et al.
Published: (2024)
Neighbour-Driven Gaussian Process Variational Autoencoders for Scalable Structured Latent Modelling
by: Shi, Xinxing, et al.
Published: (2025)
by: Shi, Xinxing, et al.
Published: (2025)
Deep Latent Force Models: ODE-based Process Convolutions for Bayesian Deep Learning
by: Baldwin-McDonald, Thomas, et al.
Published: (2023)
by: Baldwin-McDonald, Thomas, et al.
Published: (2023)
Industry-Aligned Granular Topic Modeling
by: Moon, Sae Young, et al.
Published: (2026)
by: Moon, Sae Young, et al.
Published: (2026)
Similar Items
-
Disentangling Similarity and Relatedness in Topic Models
by: Xiao, Hanlin, et al.
Published: (2026) -
Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient Clustering
by: Jiao, Shujian, et al.
Published: (2024) -
Scaling Up ESM2 Architectures for Long Protein Sequences Analysis: Long and Quantized Approaches
by: de Oliveira, Gabriel Bianchin, et al.
Published: (2025) -
Bidirectional Representations Augmented Autoregressive Biological Sequence Generation
by: Zhang, Xiang, et al.
Published: (2025) -
DNAZEN: Enhanced Gene Sequence Representations via Mixed Granularities of Coding Units
by: Mao, Lei, et al.
Published: (2025)