Property-Guided Molecular Generation and Optimization via Latent Flows

Fuente: arXiv
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Auteurs principaux: Lobo, Alexander Arjun, Awasthi, Urvi, Zhukov, Leonid
Format: Preprint
Publié: 2026
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author Lobo, Alexander Arjun
Awasthi, Urvi
Zhukov, Leonid
author_facet Lobo, Alexander Arjun
Awasthi, Urvi
Zhukov, Leonid
contents Molecular discovery is increasingly framed as an inverse design problem: identifying molecular structures that satisfy desired property profiles under feasibility constraints. While recent generative models provide continuous latent representations of chemical space, targeted optimization within these representations often leads to degraded validity, loss of structural fidelity, or unstable behavior. We introduce MoltenFlow, a modular framework that combines property-organized latent representations with flow-matching generative priors and gradient-based guidance. This formulation supports both conditioned generation and local optimization within a single latent-space framework. We show that guided latent flows enable efficient multi-objective molecular optimization under fixed oracle budgets with controllable trade-offs, while a learned flow prior improves unconditional generation quality.
format Preprint
id arxiv_https___arxiv_org_abs_2603_26889
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Property-Guided Molecular Generation and Optimization via Latent Flows
Lobo, Alexander Arjun
Awasthi, Urvi
Zhukov, Leonid
Machine Learning
Materials Science
Molecular discovery is increasingly framed as an inverse design problem: identifying molecular structures that satisfy desired property profiles under feasibility constraints. While recent generative models provide continuous latent representations of chemical space, targeted optimization within these representations often leads to degraded validity, loss of structural fidelity, or unstable behavior. We introduce MoltenFlow, a modular framework that combines property-organized latent representations with flow-matching generative priors and gradient-based guidance. This formulation supports both conditioned generation and local optimization within a single latent-space framework. We show that guided latent flows enable efficient multi-objective molecular optimization under fixed oracle budgets with controllable trade-offs, while a learned flow prior improves unconditional generation quality.
title Property-Guided Molecular Generation and Optimization via Latent Flows
topic Machine Learning
Materials Science
url https://arxiv.org/abs/2603.26889