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Main Authors: Pacela, Vitória Barin, Joshi, Shruti, Camacho, Isabela, Lacoste-Julien, Simon, Klindt, David
Format: Preprint
Published: 2026
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Online Access:https://arxiv.org/abs/2603.28744
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author Pacela, Vitória Barin
Joshi, Shruti
Camacho, Isabela
Lacoste-Julien, Simon
Klindt, David
author_facet Pacela, Vitória Barin
Joshi, Shruti
Camacho, Isabela
Lacoste-Julien, Simon
Klindt, David
contents The linear representation hypothesis states that neural network activations encode high-level concepts as linear mixtures. However, under superposition, this encoding is a projection from a higher-dimensional concept space into a lower-dimensional activation space, and a linear decision boundary in the concept space need not remain linear after projection. In this setting, classical sparse coding methods with per-sample iterative inference leverage compressed sensing guarantees to recover latent factors. Sparse autoencoders (SAEs), on the other hand, amortise sparse inference into a fixed encoder, introducing a systematic gap. We show this amortisation gap persists across training set sizes, latent dimensions, and sparsity levels, causing SAEs to fail under out-of-distribution (OOD) compositional shifts. Through controlled experiments that decompose the failure, we identify dictionary learning -- not the inference procedure -- as the binding constraint: SAE-learned dictionaries point in substantially wrong directions, and replacing the encoder with per-sample FISTA on the same dictionary does not close the gap. An oracle baseline proves the problem is solvable with a good dictionary at all scales tested. Our results reframe the SAE failure as a dictionary learning challenge, not an amortisation problem, and point to scalable dictionary learning as the key open problem for sparse inference under superposition.
format Preprint
id arxiv_https___arxiv_org_abs_2603_28744
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Stop Probing, Start Coding: Why Linear Probes and Sparse Autoencoders Fail at Compositional Generalisation
Pacela, Vitória Barin
Joshi, Shruti
Camacho, Isabela
Lacoste-Julien, Simon
Klindt, David
Machine Learning
The linear representation hypothesis states that neural network activations encode high-level concepts as linear mixtures. However, under superposition, this encoding is a projection from a higher-dimensional concept space into a lower-dimensional activation space, and a linear decision boundary in the concept space need not remain linear after projection. In this setting, classical sparse coding methods with per-sample iterative inference leverage compressed sensing guarantees to recover latent factors. Sparse autoencoders (SAEs), on the other hand, amortise sparse inference into a fixed encoder, introducing a systematic gap. We show this amortisation gap persists across training set sizes, latent dimensions, and sparsity levels, causing SAEs to fail under out-of-distribution (OOD) compositional shifts. Through controlled experiments that decompose the failure, we identify dictionary learning -- not the inference procedure -- as the binding constraint: SAE-learned dictionaries point in substantially wrong directions, and replacing the encoder with per-sample FISTA on the same dictionary does not close the gap. An oracle baseline proves the problem is solvable with a good dictionary at all scales tested. Our results reframe the SAE failure as a dictionary learning challenge, not an amortisation problem, and point to scalable dictionary learning as the key open problem for sparse inference under superposition.
title Stop Probing, Start Coding: Why Linear Probes and Sparse Autoencoders Fail at Compositional Generalisation
topic Machine Learning
url https://arxiv.org/abs/2603.28744