BioNetFlux: A Python Framework for Reaction--Diffusion--Chemotaxis Simulations on One-Dimensional Network Geometries
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arXiv
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| Format: | Preprint |
| Published: |
2026
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| _version_ | 1866912997467750400 |
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| author | Bertoluzza, Silvia |
| author_facet | Bertoluzza, Silvia |
| contents | We present BioNetFlux, an open-source Python framework for the numerical simulation of coupled systems of partial differential equations (PDEs) on one-dimensional multi-arc networks by the Hybridized Discontinuous Galerkin method. Its design targets biological transport phenomena on graph-like geometries that arise naturally in microfluidic organ-on-chip (OoC) devices, vascular networks, and in-vitro cell-migration assays. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2603_29807 |
| institution | arXiv |
| publishDate | 2026 |
| record_format | arxiv |
| spellingShingle | BioNetFlux: A Python Framework for Reaction--Diffusion--Chemotaxis Simulations on One-Dimensional Network Geometries Bertoluzza, Silvia Mathematical Software Numerical Analysis We present BioNetFlux, an open-source Python framework for the numerical simulation of coupled systems of partial differential equations (PDEs) on one-dimensional multi-arc networks by the Hybridized Discontinuous Galerkin method. Its design targets biological transport phenomena on graph-like geometries that arise naturally in microfluidic organ-on-chip (OoC) devices, vascular networks, and in-vitro cell-migration assays. |
| title | BioNetFlux: A Python Framework for Reaction--Diffusion--Chemotaxis Simulations on One-Dimensional Network Geometries |
| topic | Mathematical Software Numerical Analysis |
| url | https://arxiv.org/abs/2603.29807 |