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Main Authors: Shao, Qi, Chen, Duxin, Chen, Jiawen, Zeng, Yujie, Ma, Athen, Yu, Wenwu, Latora, Vito, Lin, Wei
Format: Preprint
Published: 2026
Subjects:
Online Access:https://arxiv.org/abs/2604.00599
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author Shao, Qi
Chen, Duxin
Chen, Jiawen
Zeng, Yujie
Ma, Athen
Yu, Wenwu
Latora, Vito
Lin, Wei
author_facet Shao, Qi
Chen, Duxin
Chen, Jiawen
Zeng, Yujie
Ma, Athen
Yu, Wenwu
Latora, Vito
Lin, Wei
contents Predicting the behavior of ultra-large complex systems, from climate to biological and technological networks, is a central unsolved challenge. Existing approaches face a fundamental trade-off: equation discovery methods provide interpretability but fail to scale, while neural networks scale but operate as black boxes and often lose reliability over long times. Here, we introduce the Sparse Identification Graph Neural Network, a framework that overcome this divide by allowing to infer the governing equations of large networked systems from data. By defining symbolic discovery as edge-level information, SIGN decouples the scalability of sparse identification from network size, enabling efficient equation discovery even in large systems. SIGN allows to study networks with over 100,000 nodes while remaining robust to noise, sparse sampling, and missing data. Across diverse benchmark systems, including coupled chaotic oscillators, neural dynamics, and epidemic spreading, it recovers governing equations with high precision and sustains accurate long-term predictions. Applied to a data set of time series of temperature measurements in 71,987 sea surface positions, SIGN identifies a compact predictive network model and captures large-scale sea surface temperature conditions up to two years in advance. By enabling equation discovery at previously inaccessible scales, SIGN opens a path toward interpretable and reliable prediction of real-world complex systems.
format Preprint
id arxiv_https___arxiv_org_abs_2604_00599
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Predicting Dynamics of Ultra-Large Complex Systems by Inferring Governing Equations
Shao, Qi
Chen, Duxin
Chen, Jiawen
Zeng, Yujie
Ma, Athen
Yu, Wenwu
Latora, Vito
Lin, Wei
Machine Learning
Predicting the behavior of ultra-large complex systems, from climate to biological and technological networks, is a central unsolved challenge. Existing approaches face a fundamental trade-off: equation discovery methods provide interpretability but fail to scale, while neural networks scale but operate as black boxes and often lose reliability over long times. Here, we introduce the Sparse Identification Graph Neural Network, a framework that overcome this divide by allowing to infer the governing equations of large networked systems from data. By defining symbolic discovery as edge-level information, SIGN decouples the scalability of sparse identification from network size, enabling efficient equation discovery even in large systems. SIGN allows to study networks with over 100,000 nodes while remaining robust to noise, sparse sampling, and missing data. Across diverse benchmark systems, including coupled chaotic oscillators, neural dynamics, and epidemic spreading, it recovers governing equations with high precision and sustains accurate long-term predictions. Applied to a data set of time series of temperature measurements in 71,987 sea surface positions, SIGN identifies a compact predictive network model and captures large-scale sea surface temperature conditions up to two years in advance. By enabling equation discovery at previously inaccessible scales, SIGN opens a path toward interpretable and reliable prediction of real-world complex systems.
title Predicting Dynamics of Ultra-Large Complex Systems by Inferring Governing Equations
topic Machine Learning
url https://arxiv.org/abs/2604.00599