ToxReason: A Benchmark for Mechanistic Chemical Toxicity Reasoning via Adverse Outcome Pathway
Fuente:
arXiv
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| Main Authors: | Park, Jueon, Jang, Wonjune, Kim, Chanhwi, Park, Yein, Kang, Jaewoo |
|---|---|
| Format: | Preprint |
| Published: |
2026
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| Subjects: | |
| Online Access: | |
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