Lumbermark: Resistant Clustering by Chopping Up Mutual Reachability Minimum Spanning Trees

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1. Verfasser: Gagolewski, Marek
Format: Preprint
Veröffentlicht: 2026
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author Gagolewski, Marek
author_facet Gagolewski, Marek
contents We introduce Lumbermark, a robust divisive clustering algorithm capable of detecting clusters of varying sizes, densities, and shapes. Lumbermark iteratively chops off large limbs connected by protruding segments of a dataset's mutual reachability minimum spanning tree. The use of mutual reachability distances smoothens the data distribution and decreases the influence of low-density objects, such as noise points between clusters or outliers at their peripheries. The algorithm can be viewed as an alternative to HDBSCAN that produces partitions with user-specified sizes. A fast, easy-to-use implementation of the new method is available in the open-source 'lumbermark' package for Python and R. We show that Lumbermark performs well on benchmark data and hope it will prove useful to data scientists and practitioners across different fields.
format Preprint
id arxiv_https___arxiv_org_abs_2604_07143
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Lumbermark: Resistant Clustering by Chopping Up Mutual Reachability Minimum Spanning Trees
Gagolewski, Marek
Machine Learning
Applications
We introduce Lumbermark, a robust divisive clustering algorithm capable of detecting clusters of varying sizes, densities, and shapes. Lumbermark iteratively chops off large limbs connected by protruding segments of a dataset's mutual reachability minimum spanning tree. The use of mutual reachability distances smoothens the data distribution and decreases the influence of low-density objects, such as noise points between clusters or outliers at their peripheries. The algorithm can be viewed as an alternative to HDBSCAN that produces partitions with user-specified sizes. A fast, easy-to-use implementation of the new method is available in the open-source 'lumbermark' package for Python and R. We show that Lumbermark performs well on benchmark data and hope it will prove useful to data scientists and practitioners across different fields.
title Lumbermark: Resistant Clustering by Chopping Up Mutual Reachability Minimum Spanning Trees
topic Machine Learning
Applications
url https://arxiv.org/abs/2604.07143