A Closer Look at the Application of Causal Inference in Graph Representation Learning

Fuente: arXiv
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Autores principales: Gao, Hang, Li, Kunyu, Hong, Huang, Cui, Baoquan, Wu, Fengge
Formato: Preprint
Publicado: 2026
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author Gao, Hang
Li, Kunyu
Hong, Huang
Cui, Baoquan
Wu, Fengge
author_facet Gao, Hang
Li, Kunyu
Hong, Huang
Cui, Baoquan
Wu, Fengge
contents Modeling causal relationships in graph representation learning remains a fundamental challenge. Existing approaches often draw on theories and methods from causal inference to identify causal subgraphs or mitigate confounders. However, due to the inherent complexity of graph-structured data, these approaches frequently aggregate diverse graph elements into single causal variables, an operation that risks violating the core assumptions of causal inference. In this work, we prove that such aggregation compromises causal validity. Building on this conclusion, we propose a theoretical model grounded in the smallest indivisible units of graph data to ensure that the causal validity is guaranteed. With this model, we further analyze the costs of achieving precise causal modeling in graph representation learning and identify the conditions under which the problem can be simplified. To empirically support our theory, we construct a controllable synthetic dataset that reflects realworld causal structures and conduct extensive experiments for validation. Finally, we develop a causal modeling enhancement module that can be seamlessly integrated into existing graph learning pipelines, and we demonstrate its effectiveness through comprehensive comparative experiments.
format Preprint
id arxiv_https___arxiv_org_abs_2604_08890
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle A Closer Look at the Application of Causal Inference in Graph Representation Learning
Gao, Hang
Li, Kunyu
Hong, Huang
Cui, Baoquan
Wu, Fengge
Machine Learning
Artificial Intelligence
Modeling causal relationships in graph representation learning remains a fundamental challenge. Existing approaches often draw on theories and methods from causal inference to identify causal subgraphs or mitigate confounders. However, due to the inherent complexity of graph-structured data, these approaches frequently aggregate diverse graph elements into single causal variables, an operation that risks violating the core assumptions of causal inference. In this work, we prove that such aggregation compromises causal validity. Building on this conclusion, we propose a theoretical model grounded in the smallest indivisible units of graph data to ensure that the causal validity is guaranteed. With this model, we further analyze the costs of achieving precise causal modeling in graph representation learning and identify the conditions under which the problem can be simplified. To empirically support our theory, we construct a controllable synthetic dataset that reflects realworld causal structures and conduct extensive experiments for validation. Finally, we develop a causal modeling enhancement module that can be seamlessly integrated into existing graph learning pipelines, and we demonstrate its effectiveness through comprehensive comparative experiments.
title A Closer Look at the Application of Causal Inference in Graph Representation Learning
topic Machine Learning
Artificial Intelligence
url https://arxiv.org/abs/2604.08890