Guardado en:
| Autores principales: | , , , |
|---|---|
| Formato: | Preprint |
| Publicado: |
2026
|
| Materias: | |
| Acceso en línea: | https://arxiv.org/abs/2604.12084 |
| Etiquetas: |
Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
|
Tabla de Contenidos:
- Spatial transcriptomics (ST) measures mRNA expression while preserving spatial organization, but multi-slice analysis faces two coupled difficulties: large non-rigid deformations across slices and inter-slice batch effects when alignment and integration are treated independently. We present INST-Align, an unsupervised pairwise framework that couples a coordinate-based deformation network with a shared Canonical Expression Field, an implicit neural representation mapping spatial coordinates to expression embeddings, for joint alignment and reconstruction. A two-phase training strategy first establishes a stable canonical embedding space and then jointly optimizes deformation and spatial-feature matching, enabling mutually constrained alignment and representation learning. Cross-slice parameter sharing of the canonical field regularizes ambiguous correspondences and absorbs batch variation. Across nine datasets, INST-Align achieves state-of-the-art mean OT Accuracy (0.702), NN Accuracy (0.719), and Chamfer distance, with Chamfer reductions of up to 94.9\% on large-deformation sections relative to the strongest baseline. The framework also yields biologically meaningful spatial embeddings and coherent 3D tissue reconstruction. The code will be released after review phase.