Cover Image

ConforNets: Latents-Based Conformational Control in OpenFold3

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Lee, Minji, Kalicki, Colin, Jeon, Minkyu, Qabel, Aymen, Fadini, Alisia, AlQuraishi, Mohammed
Format:	Preprint
Published:	2026
Subjects:	Biomolecules Machine Learning
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2
by: Lin, Yeqing, et al.
Published: (2024)

QuickBind: A Light-Weight And Interpretable Molecular Docking Model
by: Treyde, Wojtek, et al.
Published: (2024)

Quantifying the Role of OpenFold Components in Protein Structure Prediction
by: Hayes, Tyler L., et al.
Published: (2025)

Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2
by: Xing, Enming, et al.
Published: (2025)

Reshaping Biomolecular Structure Prediction through Strategic Conformational Exploration with HelixFold-S1
by: Liu, Lihang, et al.
Published: (2025)

Fold-switching proteins push the boundaries of conformational ensemble prediction
by: Lee, Myeongsang, et al.
Published: (2026)

Characterizing the Conformational States of G Protein Coupled Receptors Generated with AlphaFold
by: Chib, Garima, et al.
Published: (2025)

Fold-switching Proteins
by: Chakravarty, Devlina, et al.
Published: (2025)

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction
by: The IntFold Team, et al.
Published: (2025)

Decoding How Proteins Fold
by: Vila, Jorge
Published: (2025)

Proteins with alternative folds reveal blind spots in AlphaFold-based protein structure prediction
by: Chakravarty, Devlina, et al.
Published: (2024)

SeedFold: Scaling Biomolecular Structure Prediction
by: Zhou, Yi, et al.
Published: (2025)

AlphaFold two years on: validation and impact
by: Kovalevskiy, Oleg, et al.
Published: (2024)

Inverse problems with experiment-guided AlphaFold
by: Maddipatla, Advaith, et al.
Published: (2025)

Precision Design of Cyclic Peptides using AlphaFold
by: Au, Cheuk Sau
Published: (2025)

AlphaFold Database Debiasing for Robust Inverse Folding
by: Tan, Cheng, et al.
Published: (2025)

Applications of Knot Theory for the Improvement of the AlphaFold Protein Database
by: Jahagirdar, Pranshu
Published: (2024)

Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space
by: Lee, Minji, et al.
Published: (2024)

AlphaFold2 for protein structure prediction: Best practices and critical analyses
by: Radjasandirane, Ragousandirane, et al.
Published: (2024)

Generative Modeling of Full-Atom Protein Conformations using Latent Diffusion on Graph Embeddings
by: Sengar, Aditya, et al.
Published: (2025)

RiboDiffusion: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
by: Huang, Han, et al.
Published: (2024)

Geometric-informed GFlowNets for Structure-Based Drug Design
by: Lee, Grayson, et al.
Published: (2024)

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences
by: Xing, Enming, et al.
Published: (2025)

Exploring AlphaFold 3 for CD47 Antibody-Antigen Binding Affinity: An Unexpected Discovery of Reverse docking
by: Xu, Yiyang, et al.
Published: (2025)

Mechanisms of AI Protein Folding in ESMFold
by: Lu, Kevin, et al.
Published: (2026)

RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
by: Nori, Divya, et al.
Published: (2024)

Protein Inverse Folding From Structure Feedback
by: Xu, Junde, et al.
Published: (2025)

Leveraging Conformational Diversity for Enhanced Structure-Based Virtual Screening: Insights from Molecular Dynamics Simulations of HIV-1 Protease-Ligand Complexes
by: Yang, Pei-Kun
Published: (2025)

SGNet: Folding Symmetrical Protein Complex with Deep Learning
by: Li, Zhaoqun, et al.
Published: (2024)

α-HMM: A Graphical Model for RNA Folding
by: Zhang, Sixiang, et al.
Published: (2024)

mRNA Folding Algorithms for Structure and Codon Optimization
by: Ward, Max, et al.
Published: (2025)

Full-Atom Peptide Design with Geometric Latent Diffusion
by: Kong, Xiangzhe, et al.
Published: (2024)

An Efficient Algorithm for Exploring RNA Branching Conformations under the Nearest-Neighbor Thermodynamic Model
by: Poznanović, Svetlana, et al.
Published: (2025)

AlphaFold Meets Flow Matching for Generating Protein Ensembles
by: Jing, Bowen, et al.
Published: (2024)

Latent-Y: A Lab-Validated Autonomous Agent for De Novo Drug Design
by: Latent Labs Team, et al.
Published: (2026)

Latent-X: An Atom-level Frontier Model for De Novo Protein Binder Design
by: Latent Labs Team, et al.
Published: (2025)

Drug-like antibodies with low immunogenicity in human panels designed with Latent-X2
by: Latent Labs Team, et al.
Published: (2025)

HelixFold-Multimer: Elevating Protein Complex Structure Prediction to New Heights
by: Fang, Xiaomin, et al.
Published: (2024)

AntiFold: Improved antibody structure-based design using inverse folding
by: Høie, Magnus Haraldson, et al.
Published: (2024)

Beyond Olfaction: New Insights into Human Odorant Binding Proteins
by: Chen, Mifen, et al.
Published: (2025)