Are LLM Uncertainty and Correctness Encoded by the Same Features? A Functional Dissociation via Sparse Autoencoders

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Main Authors: Patel, Het, Chen, Tiejin, Wei, Hua, Papalexakis, Evangelos E., Chen, Jia
Format: Preprint
Published: 2026
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author Patel, Het
Chen, Tiejin
Wei, Hua
Papalexakis, Evangelos E.
Chen, Jia
author_facet Patel, Het
Chen, Tiejin
Wei, Hua
Papalexakis, Evangelos E.
Chen, Jia
contents Large language models can be uncertain yet correct, or confident yet wrong, raising the question of whether their output-level uncertainty and their actual correctness are driven by the same internal mechanisms or by distinct feature populations. We introduce a 2x2 framework that partitions model predictions along correctness and confidence axes, and uses sparse autoencoders to identify features associated with each dimension independently. Applying this to Llama-3.1-8B and Gemma-2-9B, we identify three feature populations that play fundamentally different functional roles. Pure uncertainty features are functionally essential: suppressing them severely degrades accuracy. Pure incorrectness features are functionally inert: despite showing statistically significant activation differences between correct and incorrect predictions, the majority produce near-zero change in accuracy when suppressed. Confounded features that encode both signals are detrimental to output quality, and targeted suppression of them yields a 1.1% accuracy improvement and a 75% entropy reduction, with effects transferring across the ARC-Challenge and RACE benchmarks. The feature categories are also informationally distinct: the activations of just 3 confounded features from a single mid-network layer predict model correctness (AUROC ~0.79), enabling selective abstention that raises accuracy from 62% to 81% at 53% coverage. The results demonstrate that uncertainty and correctness are distinct internal phenomena, with implications for interpretability and targeted inference-time intervention.
format Preprint
id arxiv_https___arxiv_org_abs_2604_19974
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Are LLM Uncertainty and Correctness Encoded by the Same Features? A Functional Dissociation via Sparse Autoencoders
Patel, Het
Chen, Tiejin
Wei, Hua
Papalexakis, Evangelos E.
Chen, Jia
Machine Learning
Computation and Language
I.2.7; I.2.6
Large language models can be uncertain yet correct, or confident yet wrong, raising the question of whether their output-level uncertainty and their actual correctness are driven by the same internal mechanisms or by distinct feature populations. We introduce a 2x2 framework that partitions model predictions along correctness and confidence axes, and uses sparse autoencoders to identify features associated with each dimension independently. Applying this to Llama-3.1-8B and Gemma-2-9B, we identify three feature populations that play fundamentally different functional roles. Pure uncertainty features are functionally essential: suppressing them severely degrades accuracy. Pure incorrectness features are functionally inert: despite showing statistically significant activation differences between correct and incorrect predictions, the majority produce near-zero change in accuracy when suppressed. Confounded features that encode both signals are detrimental to output quality, and targeted suppression of them yields a 1.1% accuracy improvement and a 75% entropy reduction, with effects transferring across the ARC-Challenge and RACE benchmarks. The feature categories are also informationally distinct: the activations of just 3 confounded features from a single mid-network layer predict model correctness (AUROC ~0.79), enabling selective abstention that raises accuracy from 62% to 81% at 53% coverage. The results demonstrate that uncertainty and correctness are distinct internal phenomena, with implications for interpretability and targeted inference-time intervention.
title Are LLM Uncertainty and Correctness Encoded by the Same Features? A Functional Dissociation via Sparse Autoencoders
topic Machine Learning
Computation and Language
I.2.7; I.2.6
url https://arxiv.org/abs/2604.19974